Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_C12
(522 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3 prot... 36 0.11
AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein. 36 0.11
L36531-1|AAA93514.1| 1025|Homo sapiens integrin alpha 8 subunit ... 34 0.35
AY371697-1|AAQ56848.2| 1063|Homo sapiens integrin, alpha 8 protein. 34 0.35
AL590636-1|CAI14955.1| 1063|Homo sapiens integrin, alpha 8 protein. 34 0.35
AL359645-1|CAH73424.1| 1063|Homo sapiens integrin, alpha 8 protein. 34 0.35
BC001940-1|AAH01940.2| 748|Homo sapiens hypothetical protein DK... 31 2.4
AK074809-1|BAC11221.1| 748|Homo sapiens protein ( Homo sapiens ... 31 2.4
AB162218-1|BAD36741.1| 748|Homo sapiens hFLEG1 protein. 31 2.4
AF179681-1|AAF72107.1| 1156|Homo sapiens unknown protein. 30 5.7
Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase... 29 9.9
AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 29 9.9
AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 29 9.9
AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 29 9.9
AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein. 29 9.9
AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein. 29 9.9
>AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3
protein.
Length = 1217
Score = 35.5 bits (78), Expect = 0.11
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = -1
Query: 360 TLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPA 181
T PG S+ T T S +TP++++ + V + + F + ++ +TP
Sbjct: 313 TSHSTPGFTSSITTTE---TTSESTPSLSSSTIYSTVSTSTTAITSHFTT--SETAVTPT 367
Query: 180 PEVPSELSVRAPCASLRTL 124
P PS LS P SLRTL
Sbjct: 368 PVTPSSLSTDIPTTSLRTL 386
>AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein.
Length = 957
Score = 35.5 bits (78), Expect = 0.11
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = -1
Query: 360 TLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPA 181
T PG S+ T T S +TP++++ + V + + F + ++ +TP
Sbjct: 313 TSHSTPGFTSSITTTE---TTSESTPSLSSSTIYSTVSTSTTAITSHFTT--SETAVTPT 367
Query: 180 PEVPSELSVRAPCASLRTL 124
P PS LS P SLRTL
Sbjct: 368 PVTPSSLSTDIPTTSLRTL 386
>L36531-1|AAA93514.1| 1025|Homo sapiens integrin alpha 8 subunit
protein.
Length = 1025
Score = 33.9 bits (74), Expect = 0.35
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Frame = +2
Query: 95 YEEPELLTSSRVRRDAHGALT----LNSDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQ 262
+ +P++LT + A+ LN DG + + VPFAG D+ G + + N
Sbjct: 333 FRDPQILTGTETFGRFGSAMAHLGDLNQDGYNDIAIGVPFAGKDQR-----GKVLIYNGN 387
Query: 263 KLGAATAGVALDNVNGHGVSLTDTHIPGFGDKVTAAGKVNLFHNDYHDITAKAFAT 430
K G T + GV + GFG T G ++ NDY D+ AF T
Sbjct: 388 KDGLNTKPSQV----LQGVWASHAVPSGFG--FTLRGDSDIDKNDYPDLIVGAFGT 437
>AY371697-1|AAQ56848.2| 1063|Homo sapiens integrin, alpha 8 protein.
Length = 1063
Score = 33.9 bits (74), Expect = 0.35
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Frame = +2
Query: 95 YEEPELLTSSRVRRDAHGALT----LNSDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQ 262
+ +P++LT + A+ LN DG + + VPFAG D+ G + + N
Sbjct: 371 FRDPQILTGTETFGRFGSAMAHLGDLNQDGYNDIAIGVPFAGKDQR-----GKVLIYNGN 425
Query: 263 KLGAATAGVALDNVNGHGVSLTDTHIPGFGDKVTAAGKVNLFHNDYHDITAKAFAT 430
K G T + GV + GFG T G ++ NDY D+ AF T
Sbjct: 426 KDGLNTKPSQV----LQGVWASHAVPSGFG--FTLRGDSDIDKNDYPDLIVGAFGT 475
>AL590636-1|CAI14955.1| 1063|Homo sapiens integrin, alpha 8 protein.
Length = 1063
Score = 33.9 bits (74), Expect = 0.35
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Frame = +2
Query: 95 YEEPELLTSSRVRRDAHGALT----LNSDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQ 262
+ +P++LT + A+ LN DG + + VPFAG D+ G + + N
Sbjct: 371 FRDPQILTGTETFGRFGSAMAHLGDLNQDGYNDIAIGVPFAGKDQR-----GKVLIYNGN 425
Query: 263 KLGAATAGVALDNVNGHGVSLTDTHIPGFGDKVTAAGKVNLFHNDYHDITAKAFAT 430
K G T + GV + GFG T G ++ NDY D+ AF T
Sbjct: 426 KDGLNTKPSQV----LQGVWASHAVPSGFG--FTLRGDSDIDKNDYPDLIVGAFGT 475
>AL359645-1|CAH73424.1| 1063|Homo sapiens integrin, alpha 8 protein.
Length = 1063
Score = 33.9 bits (74), Expect = 0.35
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Frame = +2
Query: 95 YEEPELLTSSRVRRDAHGALT----LNSDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQ 262
+ +P++LT + A+ LN DG + + VPFAG D+ G + + N
Sbjct: 371 FRDPQILTGTETFGRFGSAMAHLGDLNQDGYNDIAIGVPFAGKDQR-----GKVLIYNGN 425
Query: 263 KLGAATAGVALDNVNGHGVSLTDTHIPGFGDKVTAAGKVNLFHNDYHDITAKAFAT 430
K G T + GV + GFG T G ++ NDY D+ AF T
Sbjct: 426 KDGLNTKPSQV----LQGVWASHAVPSGFG--FTLRGDSDIDKNDYPDLIVGAFGT 475
>BC001940-1|AAH01940.2| 748|Homo sapiens hypothetical protein
DKFZp762E1312 protein.
Length = 748
Score = 31.1 bits (67), Expect = 2.4
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 327 VRLTPWPFTLSSATPAVAAPSFCLLVKSKEP 235
VR+TP P S A+PAV AP +C + K P
Sbjct: 175 VRVTPLP---SLASPAVPAPGYCSRISGKSP 202
>AK074809-1|BAC11221.1| 748|Homo sapiens protein ( Homo sapiens
cDNA FLJ90328 fis, clone NT2RP2001921. ).
Length = 748
Score = 31.1 bits (67), Expect = 2.4
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 327 VRLTPWPFTLSSATPAVAAPSFCLLVKSKEP 235
VR+TP P S A+PAV AP +C + K P
Sbjct: 175 VRVTPLP---SLASPAVPAPGYCSRISGKSP 202
>AB162218-1|BAD36741.1| 748|Homo sapiens hFLEG1 protein.
Length = 748
Score = 31.1 bits (67), Expect = 2.4
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 327 VRLTPWPFTLSSATPAVAAPSFCLLVKSKEP 235
VR+TP P S A+PAV AP +C + K P
Sbjct: 175 VRVTPLP---SLASPAVPAPGYCSRISGKSP 202
>AF179681-1|AAF72107.1| 1156|Homo sapiens unknown protein.
Length = 1156
Score = 29.9 bits (64), Expect = 5.7
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -1
Query: 309 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSELSVRAPCASL 133
P T TP + PSF V + PI++ + P TL P P + + P S
Sbjct: 492 PLTSDPPTPPSSTPSFKPPVTRESPISMCVDSPPPLSFLTLLPVPSTGTSVITSKPMNST 551
Query: 132 RTLELVNSSGSS 97
+ V ++ S+
Sbjct: 552 SVISTVTTNASA 563
>Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase II
transcription factor protein.
Length = 1083
Score = 29.1 bits (62), Expect = 9.9
Identities = 27/76 (35%), Positives = 32/76 (42%)
Frame = -1
Query: 372 PAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGT 193
PAA+ P P +V TP PF ++A PA AAPS P A PA T
Sbjct: 220 PAALLPLPKPAAPGTVIQTP-PFVGAAAPPAPAAPSPPAAPAPAAPAAAPP-PPPPAPAT 277
Query: 192 LTPAPEVPSELSVRAP 145
L P P+ AP
Sbjct: 278 LARPPGHPAGPPTAAP 293
>AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 29.1 bits (62), Expect = 9.9
Identities = 27/76 (35%), Positives = 32/76 (42%)
Frame = -1
Query: 372 PAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGT 193
PAA+ P P +V TP PF ++A PA AAPS P A PA T
Sbjct: 222 PAALLPLPKPAAPGTVIQTP-PFVGAAAPPAPAAPSPPAAPAPAAPAAAPP-PPPPAPAT 279
Query: 192 LTPAPEVPSELSVRAP 145
L P P+ AP
Sbjct: 280 LARPPGHPAGPPTAAP 295
>AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 29.1 bits (62), Expect = 9.9
Identities = 27/76 (35%), Positives = 32/76 (42%)
Frame = -1
Query: 372 PAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGT 193
PAA+ P P +V TP PF ++A PA AAPS P A PA T
Sbjct: 222 PAALLPLPKPAAPGTVIQTP-PFVGAAAPPAPAAPSPPAAPAPAAPAAAPP-PPPPAPAT 279
Query: 192 LTPAPEVPSELSVRAP 145
L P P+ AP
Sbjct: 280 LARPPGHPAGPPTAAP 295
>AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 29.1 bits (62), Expect = 9.9
Identities = 27/76 (35%), Positives = 32/76 (42%)
Frame = -1
Query: 372 PAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGT 193
PAA+ P P +V TP PF ++A PA AAPS P A PA T
Sbjct: 222 PAALLPLPKPAAPGTVIQTP-PFVGAAAPPAPAAPSPPAAPAPAAPAAAPP-PPPPAPAT 279
Query: 192 LTPAPEVPSELSVRAP 145
L P P+ AP
Sbjct: 280 LARPPGHPAGPPTAAP 295
>AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein.
Length = 877
Score = 29.1 bits (62), Expect = 9.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 192 LTPAPEVPSELSVRAPCASLRTL 124
+TP P PS LS P SLRTL
Sbjct: 24 VTPTPVTPSSLSTDIPTTSLRTL 46
>AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 29.1 bits (62), Expect = 9.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 192 LTPAPEVPSELSVRAPCASLRTL 124
+TP P PS LS P SLRTL
Sbjct: 24 VTPTPVTPSSLSTDIPTTSLRTL 46
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,118,217
Number of Sequences: 237096
Number of extensions: 1755295
Number of successful extensions: 4303
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4303
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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