Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_C11
(447 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 137 8e-34
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 137 8e-34
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 31 0.081
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 30 0.14
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 29 0.33
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 28 0.75
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 27 1.3
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 1.7
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 25 4.0
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 25 5.3
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 7.0
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 24 9.3
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 24 9.3
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 24 9.3
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 24 9.3
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 24 9.3
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 24 9.3
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 137 bits (331), Expect = 8e-34
Identities = 64/98 (65%), Positives = 77/98 (78%), Gaps = 1/98 (1%)
Frame = +1
Query: 97 KIGINGFGRIGRLVLR-ASIDKGADVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVD 273
K+GINGFGRIGR+VLR A + K VVAINDPFI L+YM Y+F+YDSTHGRF G+VE D
Sbjct: 5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64
Query: 274 GHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVF 387
G LV++G I V +ERDP I W +GA+YV+ESTGVF
Sbjct: 65 GKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVF 102
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 389 TNTDKASAHLVGGAKK 436
T + ASAHL GGAK+
Sbjct: 103 TTQETASAHLKGGAKR 118
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 137 bits (331), Expect = 8e-34
Identities = 64/98 (65%), Positives = 77/98 (78%), Gaps = 1/98 (1%)
Frame = +1
Query: 97 KIGINGFGRIGRLVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVD 273
K+GINGFGRIGR+VLR +I G VVA+NDPFI LDYM Y+F+YDSTHGRF+G+VE
Sbjct: 5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64
Query: 274 GHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVF 387
G LV++G I V +ERDP I W +GAEYV+ESTGVF
Sbjct: 65 GKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVF 102
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 389 TNTDKASAHLVGGAKK 436
T + ASAHL GGAK+
Sbjct: 103 TTKETASAHLKGGAKR 118
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 31.1 bits (67), Expect = 0.081
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -1
Query: 159 LINRSTEHQATDATKTVNSDFRHDYGKSIFSQRSHSTFTLHKMEFVNV 16
LI + +HQ+T+ TKT + H+ ++ + S ++K+ + NV
Sbjct: 11 LIESTIKHQSTNYTKTETATTSHEVSENANEHKGKSNIDINKIAYYNV 58
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 30.3 bits (65), Expect = 0.14
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = -1
Query: 432 LAPPTK*AEALSVFVEHTG*FNNVFSTSLTPWNSMGIPLREHSYLLSVYDEVSI 271
L PP + A +L++F + + S S +S +PLREH L +VY +V +
Sbjct: 25 LIPPFQTASSLNIFRPYVIFSRSHRSLSSVDVSSPSLPLREHLPLKNVYSQVPL 78
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 29.1 bits (62), Expect = 0.33
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +1
Query: 70 KYTLTIIMSKIGINGFGRIGRLVLRASIDKGADVVAINDPF----IGLDYMVYLFQYDST 237
KY L +S + G GR+ L++ SI K D + PF + Y++ Q D
Sbjct: 627 KYKLDSCVSTLTRMGLGRVSTLLVTDSISKCIDEITKASPFADHPAAMQYIMNAAQ-DIL 685
Query: 238 HGRFKGTVEAVD 273
RF T E V+
Sbjct: 686 RRRFHATSEQVE 697
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 27.9 bits (59), Expect = 0.75
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 443 DYFSWLHPPSEQKLYQCLWNTPVDSTTY 360
DY W PS K Y WN V+ +TY
Sbjct: 66 DYHIWHTAPSTGKTYLQPWNDAVEPSTY 93
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 1.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 104 ELTVLVASVAWCSVLRLIRV 163
+L+V VA +AWC RL+R+
Sbjct: 122 KLSVAVAELAWCPKSRLVRI 141
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 1.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 297 LSVYDEVSIYGLNGTLETTVSRIILEKV 214
L + V++ G NG +TT+ ++ILEKV
Sbjct: 617 LDLKSRVALVGPNGAGKTTLIKLILEKV 644
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.4 bits (53), Expect = 4.0
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -3
Query: 328 GDPSQRTQL--SSFRLRRGVHLRPQRY 254
G P++R L +F +RRGVHL+ +Y
Sbjct: 163 GIPTKRKDLFPCNFFIRRGVHLKVNKY 189
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 25.0 bits (52), Expect = 5.3
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Frame = +1
Query: 70 KYTLTIIMS----KIGINGFGRIGRLVLRASIDKGADVVAINDPFIGLD------YMVYL 219
+Y +TI + ++ +N F +G+L++ + D+ D+ ND ++ YM Y+
Sbjct: 508 RYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQE-NDENAFMNCMAEACYMPYI 566
Query: 220 FQYDSTHGRFKG 255
FQ + FKG
Sbjct: 567 FQCRAKQDNFKG 578
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 24.6 bits (51), Expect = 7.0
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = -1
Query: 372 FNNVFSTSLTPWNSMGIPLREHSYLLSVYDEVSIYGLNGTLETTVSRIILEKVDHVVKTN 193
+N + +NS+ R S L + E I+ ++ TLE+ S + DHV K
Sbjct: 684 YNTIMEVWNIKYNSLNALARLLSALYKFHPEFCIHVIDDTLESLFSAV--NNSDHVEK-Q 740
Query: 192 ERIIDSNNIGTL 157
+R+ + I L
Sbjct: 741 KRLAQARFISEL 752
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 333 SMGIPLREHSYLLSVYDEVSIY 268
S G+PL + LLS+Y+ IY
Sbjct: 648 SKGVPLLVRNVLLSIYENKIIY 669
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 24.2 bits (50), Expect = 9.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 172 QHRHPYQSKHGAPGDR 125
QH PY S +G PG R
Sbjct: 208 QHHSPYPSDNGFPGHR 223
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 323 SLSENTAIFFPFTTRCPSTASTV 255
++S ++ I PFT+ PST ST+
Sbjct: 140 NVSNSSQILSPFTSLLPSTLSTL 162
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 427 STHQVSRSFISVCGTHRL 374
S HQ RS IS C TH L
Sbjct: 125 SKHQQLRSHISACHTHLL 142
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 24.2 bits (50), Expect = 9.3
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +1
Query: 34 LVE-SER*VTSLRKYTLTIIMSKIGINGFGRIGRLVLRASIDKGADVVAINDPF 192
LVE +ER + +R ++ +I+ +G N R+ +++ S D+GADV + ++ F
Sbjct: 252 LVEITERAMAHIRADSV-LIVGGVGCNE--RLQQMMAEMSSDRGADVFSTDERF 302
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 24.2 bits (50), Expect = 9.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 166 DVVAINDPFIGLDYMVYLFQY 228
D++ + P++ DY V LF+Y
Sbjct: 677 DLLIVISPYLNQDYAVTLFEY 697
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,924,981
Number of Sequences: 5004
Number of extensions: 38132
Number of successful extensions: 145
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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