Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_C11
(447 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X15254-2|CAA33327.1| 341|Caenorhabditis elegans gpd-3 gene prod... 137 4e-33
U49941-6|AAB53874.1| 341|Caenorhabditis elegans Gpd (glyceralde... 137 4e-33
U49941-5|AAB53869.1| 341|Caenorhabditis elegans Gpd (glyceralde... 137 4e-33
X15254-1|CAA33326.1| 341|Caenorhabditis elegans gpd-2 gene prod... 134 3e-32
Z49070-2|CAA88870.1| 341|Caenorhabditis elegans Hypothetical pr... 129 8e-31
Z48783-3|CAA88697.1| 341|Caenorhabditis elegans Hypothetical pr... 129 8e-31
X52674-1|CAA36900.1| 341|Caenorhabditis elegans gpd-1 protein. 129 8e-31
X52673-1|CAA36899.1| 341|Caenorhabditis elegans gpd-4 protein. 129 8e-31
X04818-1|CAA28504.1| 341|Caenorhabditis elegans glyceraldehyde-... 129 8e-31
AF040657-1|AAB95054.1| 758|Caenorhabditis elegans Hypothetical ... 32 0.22
AC025726-9|AAK73924.1| 594|Caenorhabditis elegans Hypothetical ... 30 0.67
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 29 1.5
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil... 27 4.7
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 27 4.7
Z22179-17|CAA80171.2| 691|Caenorhabditis elegans Hypothetical p... 27 8.2
Z22173-3|CAA80127.2| 691|Caenorhabditis elegans Hypothetical pr... 27 8.2
U53335-8|AAA96173.1| 606|Caenorhabditis elegans Hypothetical pr... 27 8.2
>X15254-2|CAA33327.1| 341|Caenorhabditis elegans gpd-3 gene product
protein.
Length = 341
Score = 137 bits (331), Expect = 4e-33
Identities = 68/102 (66%), Positives = 82/102 (80%), Gaps = 6/102 (5%)
Frame = +1
Query: 100 IGINGFGRIGRLVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVDG 276
+GINGFGRIGRLVLRA+++K + +VVA+NDPFI +DYMVYLFQYDSTHGRFKGTV
Sbjct: 6 VGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGD 65
Query: 277 HLVV--NGK---KIAVFSERDPHAIPWGQAGAEYVVESTGVF 387
+L+V GK KI V++ RDP I WG +GA+YVVESTGVF
Sbjct: 66 YLLVAKEGKSQHKIKVYNSRDPAEIQWGASGADYVVESTGVF 107
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 389 TNTDKASAHLVGGAKK 436
T +KA+AHL GGAKK
Sbjct: 108 TTIEKANAHLKGGAKK 123
>U49941-6|AAB53874.1| 341|Caenorhabditis elegans Gpd
(glyceraldehyde 3-phosphatedehydrogenase) protein 2
protein.
Length = 341
Score = 137 bits (331), Expect = 4e-33
Identities = 68/102 (66%), Positives = 82/102 (80%), Gaps = 6/102 (5%)
Frame = +1
Query: 100 IGINGFGRIGRLVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVDG 276
+GINGFGRIGRLVLRA+++K + +VVA+NDPFI +DYMVYLFQYDSTHGRFKGTV
Sbjct: 6 VGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGD 65
Query: 277 HLVV--NGK---KIAVFSERDPHAIPWGQAGAEYVVESTGVF 387
+L+V GK KI V++ RDP I WG +GA+YVVESTGVF
Sbjct: 66 YLLVAKEGKSQHKIKVYNSRDPAEIQWGASGADYVVESTGVF 107
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 389 TNTDKASAHLVGGAKK 436
T +KA+AHL GGAKK
Sbjct: 108 TTIEKANAHLKGGAKK 123
>U49941-5|AAB53869.1| 341|Caenorhabditis elegans Gpd
(glyceraldehyde 3-phosphatedehydrogenase) protein 3
protein.
Length = 341
Score = 137 bits (331), Expect = 4e-33
Identities = 68/102 (66%), Positives = 82/102 (80%), Gaps = 6/102 (5%)
Frame = +1
Query: 100 IGINGFGRIGRLVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVDG 276
+GINGFGRIGRLVLRA+++K + +VVA+NDPFI +DYMVYLFQYDSTHGRFKGTV
Sbjct: 6 VGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGD 65
Query: 277 HLVV--NGK---KIAVFSERDPHAIPWGQAGAEYVVESTGVF 387
+L+V GK KI V++ RDP I WG +GA+YVVESTGVF
Sbjct: 66 YLLVAKEGKSQHKIKVYNSRDPAEIQWGASGADYVVESTGVF 107
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 389 TNTDKASAHLVGGAKK 436
T +KA+AHL GGAKK
Sbjct: 108 TTIEKANAHLKGGAKK 123
>X15254-1|CAA33326.1| 341|Caenorhabditis elegans gpd-2 gene product
protein.
Length = 341
Score = 134 bits (324), Expect = 3e-32
Identities = 67/102 (65%), Positives = 81/102 (79%), Gaps = 6/102 (5%)
Frame = +1
Query: 100 IGINGFGRIGRLVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVDG 276
+GINGFGRIGRLVLRA+++K + +V A+NDPFI +DYMVYLFQYDSTHGRFKGTV
Sbjct: 6 VGINGFGRIGRLVLRAAVEKDSVNVDAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGD 65
Query: 277 HLVV--NGK---KIAVFSERDPHAIPWGQAGAEYVVESTGVF 387
+L+V GK KI V++ RDP I WG +GA+YVVESTGVF
Sbjct: 66 YLLVAKEGKSQHKIKVYNSRDPAEIQWGASGADYVVESTGVF 107
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 389 TNTDKASAHLVGGAKK 436
T +KA+AHL GGAKK
Sbjct: 108 TTIEKANAHLKGGAKK 123
>Z49070-2|CAA88870.1| 341|Caenorhabditis elegans Hypothetical
protein T09F3.3 protein.
Length = 341
Score = 129 bits (312), Expect = 8e-31
Identities = 65/104 (62%), Positives = 80/104 (76%), Gaps = 6/104 (5%)
Frame = +1
Query: 94 SKIGINGFGRIGRLVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAV 270
+ +GINGFGRIGRLVLRA+++K VVA+NDPFI +DYMVYLF+YDSTHG+FKGTV
Sbjct: 4 ANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFKGTVTYD 63
Query: 271 DGHLVV--NGK---KIAVFSERDPHAIPWGQAGAEYVVESTGVF 387
L+V +GK KI VF+ +DP AI WG A++VVESTGVF
Sbjct: 64 GDFLIVQKDGKSSHKIKVFNSKDPAAIAWGSVKADFVVESTGVF 107
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 389 TNTDKASAHLVGGAKK 436
T +KASAHL GGAKK
Sbjct: 108 TTKEKASAHLQGGAKK 123
>Z48783-3|CAA88697.1| 341|Caenorhabditis elegans Hypothetical
protein F33H1.2 protein.
Length = 341
Score = 129 bits (312), Expect = 8e-31
Identities = 65/104 (62%), Positives = 80/104 (76%), Gaps = 6/104 (5%)
Frame = +1
Query: 94 SKIGINGFGRIGRLVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAV 270
+ +GINGFGRIGRLVLRA+++K VVA+NDPFI +DYMVYLF+YDSTHG+FKGTV
Sbjct: 4 ANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFKGTVTYD 63
Query: 271 DGHLVV--NGK---KIAVFSERDPHAIPWGQAGAEYVVESTGVF 387
L+V +GK KI VF+ +DP AI WG A++VVESTGVF
Sbjct: 64 GDFLIVQKDGKSSHKIKVFNSKDPAAIAWGSVKADFVVESTGVF 107
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 389 TNTDKASAHLVGGAKK 436
T +KASAHL GGAKK
Sbjct: 108 TTKEKASAHLQGGAKK 123
>X52674-1|CAA36900.1| 341|Caenorhabditis elegans gpd-1 protein.
Length = 341
Score = 129 bits (312), Expect = 8e-31
Identities = 65/104 (62%), Positives = 80/104 (76%), Gaps = 6/104 (5%)
Frame = +1
Query: 94 SKIGINGFGRIGRLVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAV 270
+ +GINGFGRIGRLVLRA+++K VVA+NDPFI +DYMVYLF+YDSTHG+FKGTV
Sbjct: 4 ANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFKGTVTYD 63
Query: 271 DGHLVV--NGK---KIAVFSERDPHAIPWGQAGAEYVVESTGVF 387
L+V +GK KI VF+ +DP AI WG A++VVESTGVF
Sbjct: 64 GDFLIVQKDGKSSHKIKVFNSKDPAAIAWGSVKADFVVESTGVF 107
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 389 TNTDKASAHLVGGAKK 436
T +KASAHL GGAKK
Sbjct: 108 TTKEKASAHLQGGAKK 123
>X52673-1|CAA36899.1| 341|Caenorhabditis elegans gpd-4 protein.
Length = 341
Score = 129 bits (312), Expect = 8e-31
Identities = 65/104 (62%), Positives = 80/104 (76%), Gaps = 6/104 (5%)
Frame = +1
Query: 94 SKIGINGFGRIGRLVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAV 270
+ +GINGFGRIGRLVLRA+++K VVA+NDPFI +DYMVYLF+YDSTHG+FKGTV
Sbjct: 4 ANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFKGTVTYD 63
Query: 271 DGHLVV--NGK---KIAVFSERDPHAIPWGQAGAEYVVESTGVF 387
L+V +GK KI VF+ +DP AI WG A++VVESTGVF
Sbjct: 64 GDFLIVQKDGKSSHKIKVFNSKDPAAIAWGSVKADFVVESTGVF 107
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 389 TNTDKASAHLVGGAKK 436
T +KASAHL GGAKK
Sbjct: 108 TTKEKASAHLQGGAKK 123
>X04818-1|CAA28504.1| 341|Caenorhabditis elegans
glyceraldehyde-3-phosphate dehydrogenaseprotein.
Length = 341
Score = 129 bits (312), Expect = 8e-31
Identities = 65/104 (62%), Positives = 80/104 (76%), Gaps = 6/104 (5%)
Frame = +1
Query: 94 SKIGINGFGRIGRLVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAV 270
+ +GINGFGRIGRLVLRA+++K VVA+NDPFI +DYMVYLF+YDSTHG+FKGTV
Sbjct: 4 ANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFKGTVTYD 63
Query: 271 DGHLVV--NGK---KIAVFSERDPHAIPWGQAGAEYVVESTGVF 387
L+V +GK KI VF+ +DP AI WG A++VVESTGVF
Sbjct: 64 GDFLIVQKDGKSSHKIKVFNSKDPAAIAWGSVKADFVVESTGVF 107
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 389 TNTDKASAHLVGGAKK 436
T +KASAHL GGAKK
Sbjct: 108 TTKEKASAHLQGGAKK 123
>AF040657-1|AAB95054.1| 758|Caenorhabditis elegans Hypothetical
protein T20H9.6 protein.
Length = 758
Score = 31.9 bits (69), Expect = 0.22
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = -1
Query: 348 LTPWNSMGIPLREHSYLLSVYDEVSIYG-LNGTLETTVSRIILEKVDHVVK-TNERIIDS 175
L + + P L VY+ + Y ++ TLETT+ I + +D+V+K +++
Sbjct: 242 LFEFEKLNNPQNSFPLLYPVYETIQEYSKISETLETTILSGIQKNIDNVIKIAKSAKLNA 301
Query: 174 NNIGTLINR--STEHQATDATKTVNSDFRHD 88
++ L N S ++T A+K + F D
Sbjct: 302 ESVEQLSNMLLSRHSKSTKASKHITGFFNGD 332
>AC025726-9|AAK73924.1| 594|Caenorhabditis elegans Hypothetical
protein Y71G12B.23a protein.
Length = 594
Score = 30.3 bits (65), Expect = 0.67
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 217 LFQYDSTHGRFKGTVEAVDGHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVF 387
L+QY+ H R+K T+E + L+ G +A+F+ D + W G ++ + GVF
Sbjct: 496 LYQYNF-HERYK-TLETILYILIAAGPSVAIFTMNDRTGLEWMMTGG--MMYAVGVF 548
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 29.1 bits (62), Expect = 1.5
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = -2
Query: 383 TPVDSTTYSAPA*PHGIA---WGSLSENTA---IFFPFTTRCPSTASTVPLKRP*VES 228
TPV +TT + PA P G+++ +T + P TT P+T +T P+ +P V S
Sbjct: 491 TPVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVPTTTGSPTTQTTAPVTKPTVPS 548
>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
protein 3, isoform b protein.
Length = 1361
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 393 FVEHTG*FNNVFSTSLTPWNSMGIPLREHSYLLSVYDEV 277
F H G N +T + P+ S+G+ + + LL YDE+
Sbjct: 671 FATHLGINFNAATTQVVPFLSLGLGIDDMFLLLHNYDEI 709
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 393 FVEHTG*FNNVFSTSLTPWNSMGIPLREHSYLLSVYDEV 277
F H G N +T + P+ S+G+ + + LL YDE+
Sbjct: 671 FATHLGINFNAATTQVVPFLSLGLGIDDMFLLLHNYDEI 709
>Z22179-17|CAA80171.2| 691|Caenorhabditis elegans Hypothetical
protein F58A4.11 protein.
Length = 691
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 197 PMKGSLIATTSAPLSIEARSTRRP-MRPKPLIPIFDMI 87
PM S T ++ S+E+ T+R R P+ P FD+I
Sbjct: 169 PMPASPCTTAASAPSVESTPTKRKRQRRNPVWPYFDVI 206
>Z22173-3|CAA80127.2| 691|Caenorhabditis elegans Hypothetical
protein F58A4.11 protein.
Length = 691
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 197 PMKGSLIATTSAPLSIEARSTRRP-MRPKPLIPIFDMI 87
PM S T ++ S+E+ T+R R P+ P FD+I
Sbjct: 169 PMPASPCTTAASAPSVESTPTKRKRQRRNPVWPYFDVI 206
>U53335-8|AAA96173.1| 606|Caenorhabditis elegans Hypothetical
protein C55C3.1 protein.
Length = 606
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 252 LETTVSRIILEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDAT 118
L + R+IL V+H++ +N+ II + + R EH ++T
Sbjct: 67 LADQLPRLILPDVEHILPSNQGIIYISKVHLSRFRRAEHHQLNST 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,681,951
Number of Sequences: 27780
Number of extensions: 217126
Number of successful extensions: 767
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -