Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C10
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   1.3  
SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex...    27   2.3  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    25   5.4  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   7.2  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 254 FSFLGLVFMLAVLPETKGKSFASIQAQLRREVAKDNSKKLATVEY 388
           F F  L F++       G    S++  +R EV ++ SKK   V+Y
Sbjct: 223 FRFFILFFIIITGTIVYGSCMISVRRNIREEVVQELSKKNGDVDY 267


>SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex
           subunit Tim22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 417 ILLRGIGSRQYSTVASFLELSLATSLRSCACIEA 316
           I  R +GSR +ST  +F  L L  S   C CIEA
Sbjct: 91  IQARDMGSRSFSTAKNFGLLGLIYSGSEC-CIEA 123


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +2

Query: 206 VKDAYEIYTVFWGFAAFSFLGLVFMLAVLPETKGKSFASIQAQLR 340
           V+  +E++   W  +    +  V +   LP+ KG+S+  +   +R
Sbjct: 315 VESVHELH--IWQLSDVKLIATVHVCVTLPDDKGESYTKLTTDIR 357


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 150 IHEAYSLTLVGNISPIVTYGTVDKPMA 70
           IH   S +L+  ISPI  Y   D P++
Sbjct: 493 IHPTLSRSLIPVISPITIYDVDDSPLS 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,296
Number of Sequences: 5004
Number of extensions: 46005
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)