Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C10
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    76   2e-14
SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7)                  37   0.012
SB_22093| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_22018| Best HMM Match : VKOR (HMM E-Value=5.9)                      29   1.8  
SB_16663| Best HMM Match : Keratin_B2 (HMM E-Value=0.61)               27   7.3  
SB_57281| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)                27   7.3  
SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18)                   27   7.3  
SB_15390| Best HMM Match : rve (HMM E-Value=5.2e-36)                   27   9.7  
SB_53856| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 34/102 (33%), Positives = 59/102 (57%)
 Frame = +2

Query: 23  LHWLPLAALLVYIVCYAIGLSTVPYVTIGEMFPTNVKLYASCIAHIYTGISMFAVQKLFQ 202
           + WL + +++V+ + +A+    VP++ + E+FP   +  AS I+ +      FAV K F 
Sbjct: 394 ISWLAITSIVVFNLVFALAWGPVPWLVMSEIFPLQARGIASSISTLCNWSLAFAVTKTFV 453

Query: 203 VVKDAYEIYTVFWGFAAFSFLGLVFMLAVLPETKGKSFASIQ 328
            ++DA  I   +W +   SFLG +F+L  +PETKGK+   I+
Sbjct: 454 NIEDAITIQGTYWFYGGLSFLGFLFVLMFVPETKGKTLEQIE 495


>SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7)
          Length = 124

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +2

Query: 95  YVTIGEMFPTNVKLYASCIAHIYT-GISMFAVQKLFQVVKDAYEIYTVFWGFAAFSFLGL 271
           ++ + E+FP+ +K  A  +A +   G ++F V   F  +  +      F+ +     + +
Sbjct: 3   WLLLSEIFPSGIKGRAFSLATVLNWGTNVF-VSFTFLDLLGSIGTSGTFFFYGLICVIAI 61

Query: 272 VFMLAVLPETKGKSFASIQAQLRREVAK 355
           VF+   +PETK K+   I A+L  + AK
Sbjct: 62  VFIYKYVPETKNKTLEQISAELNSKKAK 89


>SB_22093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 742

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = +2

Query: 5   KALVSHLHWL-----PLAALLVYIVCYAIGLSTVPYVTI 106
           K  VS++ W+      LA  LV IVC  + + T+P +TI
Sbjct: 15  KIAVSYVRWMMSRPVDLAVFLVCIVCLVVAVKTLPNITI 53


>SB_22018| Best HMM Match : VKOR (HMM E-Value=5.9)
          Length = 433

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = +2

Query: 95  YVTIGEMF-PTNVKLYASCIAHIYTGISMFAVQKLFQVV---KDAYEIY-TVFWGFAAFS 259
           ++T  ++F  T V  Y SC+ HIYT     A     Q V      Y++Y ++   F+A S
Sbjct: 301 FMTGSDLFLHTTVHRYMSCLLHIYTQSHRIAQLDFSQPVPGLSSFYDLYSSLLTHFSAVS 360

Query: 260 FLGLVF-MLAVLPETKGKS 313
           +   +F    VLP T+ ++
Sbjct: 361 YGDSLFGKFVVLPLTQAQN 379


>SB_16663| Best HMM Match : Keratin_B2 (HMM E-Value=0.61)
          Length = 385

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 16  LTPPLVAVGCSACLHRVLRHRFVDSSVCH 102
           L+P +V  GC   L RV+  R V +S CH
Sbjct: 311 LSPVVVTSGCHEWLSRVVLSRVVVTSGCH 339


>SB_57281| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
          Length = 319

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 16  LTPPLVAVGCSACLHRVLRHRFVDSSVCH 102
           L+P +V  GC   L RV+  R V +S CH
Sbjct: 245 LSPVVVTSGCHEWLSRVVLSRVVVTSGCH 273


>SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18)
          Length = 1046

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 206  VKDAYEIYTVFWGFAAFSFLGLVFMLAVLPETKGKSFASIQAQLRREVAKDNSK 367
            +KD  + YT F  + AF   G ++  + LP       A  Q ++ + V ++N K
Sbjct: 859  LKDEDKPYTAFEPYTAFEARGNLYQFSRLPFGVTNGLACFQREMTKFVEENNLK 912


>SB_15390| Best HMM Match : rve (HMM E-Value=5.2e-36)
          Length = 748

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 206 VKDAYEIYTVFWGFAAFSFLGLVFMLAVLPETKGKSFASIQAQLRREVAKDNSK 367
           +KD  + YT F  + AF   G ++  + LP       A  Q ++ + V ++N K
Sbjct: 63  LKDEDKPYTAFEPYTAFEARGNLYQFSRLPFGVTNGVACFQREMTKFVEENNLK 116


>SB_53856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = -1

Query: 151 DTRSIQLDISRKHLSYSDIRNCR---QTDGVAHD---VNKQSSQRQPV 26
           + RSI  DIS+ HLS  D   CR   +  GV  D   V K   Q Q V
Sbjct: 99  NNRSIHKDISKDHLSRHDEVRCRFSYRVSGVLWDILYVTKSDGQPQRV 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,019,988
Number of Sequences: 59808
Number of extensions: 348776
Number of successful extensions: 832
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)