Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C09
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    38   8e-04
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    35   0.006
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   4.7  
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    25   6.2  
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    25   6.2  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    24   8.2  

>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 37.5 bits (83), Expect = 8e-04
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +2

Query: 224 VLAP-QIQTFSLASHLISRTMASLTQMHKTGPHIKKRKSRNPLNGNPFAKGVVLKTLIKK 400
           V++P Q Q FS +S ++ +T+    +  +  P  K  K    L G+PF +GV  +    K
Sbjct: 5   VISPFQAQAFSSSSVML-KTLNQTIRNKEKRPE-KTNKQSVALEGSPFRRGVCTRVFTVK 62

Query: 401 PKKPN 415
           PKKPN
Sbjct: 63  PKKPN 67


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 34.7 bits (76), Expect = 0.006
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
 Frame = +1

Query: 121 NL*DESSKTRVFSANHRLKDAMYTNTSNITIIKPSLSATNTNI*SRFTSHQ*NNGLF--- 291
           +L D S+  R    N+ ++  M  NT+NITI+ PSL  ++     + T+   NNGL    
Sbjct: 140 DLGDSSAIGRTILVNNSVEPQM-ENTANITIVSPSLKESDFESEEKATND--NNGLIETN 196

Query: 292 -NSDA*DGTSHQEKE 333
            NS   + + H+E+E
Sbjct: 197 HNSKLEESSEHEEEE 211


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 408 FFGFLISVFKTTPLAKGFPLSGFLDFLFLM*GPVLCI 298
           + G+L+  F  + L + FPLS  L    ++ G +LC+
Sbjct: 110 YLGYLVFEFPASLLLQRFPLSKTLCVFLVIWGFLLCM 146


>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 341 NPLNGNPFAKGVVLKTLIKKPKKPN 415
           +P  G+  AKG+V++ +  + K+PN
Sbjct: 39  SPFGGSSHAKGIVVEKIGVEAKQPN 63


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 341 NPLNGNPFAKGVVLKTLIKKPKKPN 415
           +P  G+  AKG+V++ +  + K+PN
Sbjct: 39  SPFGGSSHAKGIVVEKIGVEAKQPN 63


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 278 TMASLTQMHKTGPHIKKRKSRNPLNGNPFA 367
           ++  LT    T    KKRK   P++GN F+
Sbjct: 61  SLRKLTNAQNTIIEDKKRKVEKPVSGNQFS 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,558,018
Number of Sequences: 5004
Number of extensions: 27746
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)