Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C09
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0802 - 27823213-27823701,27823911-27823959,27824053-278241...    29   1.1  
02_05_0783 + 31723330-31723585,31723683-31723857,31723953-317241...    28   2.6  
11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553...    27   4.6  
02_04_0653 - 24747959-24748276,24748847-24748959,24749815-247500...    27   8.0  

>03_05_0802 -
           27823213-27823701,27823911-27823959,27824053-27824120,
           27824208-27824276,27824391-27824460,27824556-27824635,
           27824706-27824784,27824949-27825025,27825110-27825176,
           27825285-27825381,27825478-27825574,27825701-27825739,
           27825843-27825907,27826034-27826142,27826275-27826487
          Length = 555

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +1

Query: 133 ESSKTRVFSANHRLKDAMYTNTSNITIIKPSLSATNTNI*SRFTSHQ 273
           + SK RV++   R+    + NTS+ T+I+  ++A NT   SR  SH+
Sbjct: 390 DDSKVRVWNTERRV----FPNTSSPTVIRKRITAPNTG--SRSASHE 430


>02_05_0783 +
           31723330-31723585,31723683-31723857,31723953-31724166,
           31724388-31725032,31725199-31725335,31725440-31725554
          Length = 513

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +2

Query: 185 CTQIQAISQLSNLVLAPQIQTFSLASHLISRTMASLTQMHKTGPHIKKRKSRNPLNGNP 361
           C  ++AI   +  +LAP   +      ++S +  S   +  T      ++S +PLNG P
Sbjct: 276 CEGLEAIFCTNQEMLAPTTSSIMCDDEIVSSSTFSAPDLVATYVPRSMKRSHDPLNGTP 334


>11_01_0678 -
           5534879-5534883,5535430-5535529,5535638-5535799,
           5536000-5536966,5537444-5537561,5538682-5538871,
           5538952-5539107,5539296-5540315
          Length = 905

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 179 TQCTQIQAISQLSNLVLAPQIQTFSLASHLI 271
           T C  +QA+SQ  NLVL+   Q F     L+
Sbjct: 795 TNCVIMQALSQAKNLVLSAHEQEFIFKKELM 825


>02_04_0653 -
           24747959-24748276,24748847-24748959,24749815-24750015,
           24750097-24750267,24750354-24750425,24751515-24751543,
           24752161-24752303
          Length = 348

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 198 CICVHCVFKPVVSRENPRLRRFISQI 121
           C+C+  ++KPVV  +  R+  +  QI
Sbjct: 45  CVCLELLYKPVVIEDEKRVDTYSPQI 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,298,080
Number of Sequences: 37544
Number of extensions: 152348
Number of successful extensions: 330
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)