Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C09
         (416 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         30   0.67 
SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)              30   0.88 
SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               27   4.7  
SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)             27   4.7  
SB_44830| Best HMM Match : I-set (HMM E-Value=1.1e-08)                 27   6.2  
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)                   27   8.2  
SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = +2

Query: 275 RTMASLTQMHKTGPHIKK---RKSRNPLNG---NPFAKGVVLKTLIKKPKKPN 415
           R M +L Q+ +  P  K    +K   P       P  KGV +K  I+KPKKPN
Sbjct: 193 RWMPTLNQIRRQKPRTKNMAIKKFVPPSEKVMLGPQRKGVCVKVFIRKPKKPN 245


>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
          Length = 1596

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -3

Query: 204 IACICVHCVFKPVVSRENPRLRRFISQINDSFVKIIMSLFQI*LNKNL 61
           + C+C +C  K +V   NPR++  +S+ +    K +M ++ +   KN+
Sbjct: 504 LRCVCFYCS-KLLVDLNNPRVKEILSKSHGQPRKRMMHMYDLCKGKNI 550


>SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 195 ICVHCVFKPVVSRENPRLRRFISQINDSFVKIIMSLFQI*LNKNL 61
           +C+HC+ +PV + EN  +   +  ++ S V    + FQ  + +NL
Sbjct: 8   VCLHCLTEPVNATENEEIDEPVFALSWSLVNAKSNQFQQFIEENL 52


>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 317 HIKKRKSRNPLNGNPFAKGVVLKTLIKKPKKPN 415
           H+      NP  G   AKG+VL+ +  + K+PN
Sbjct: 30  HLGTALKANPFGGASHAKGIVLEKVGVEAKQPN 62


>SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)
          Length = 504

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 213 NC-DIACICVHCVFKPVVSRENP 148
           NC ++ C+CV C+ +P+  R+ P
Sbjct: 354 NCLNVQCLCVKCLLRPMPLRQMP 376


>SB_44830| Best HMM Match : I-set (HMM E-Value=1.1e-08)
          Length = 480

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 191 QIQAISQLSNLVLAPQIQTFSLASHLISRTMASLTQMHK 307
           Q+Q + +LS + LAP  +    +S L+S+    +TQ ++
Sbjct: 50  QVQTLPELSRIFLAPTNERRPFSSALVSQMQRLMTQEYQ 88


>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
          Length = 375

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 158 LLTTGLKTQCTQIQAISQLSNLVLAPQIQTFSLASHLISRTMASLT 295
           LL T  +  C   +A+  +    L     T+S  +H+IS TM+ LT
Sbjct: 97  LLETTDEVFCIDNEALYDICYKTLKLNTTTYSDLNHIISNTMSGLT 142


>SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 768

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -3

Query: 204 IACICVHCVFKPVVSRENPRLR-RFISQINDSFVKIIMSLFQI*LNKNLQMDKNNLL*PR 28
           I  +CV  +F   VS  N R   R+I+Q+    ++ I  +  +     +++ +N+   PR
Sbjct: 60  IVVVCV-AIF---VSNANARFTYRYINQMETGKLQYIQQMNDLKERLAIELSRNHAAPPR 115

Query: 27  ADSCS 13
           A SC+
Sbjct: 116 ASSCA 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,322,259
Number of Sequences: 59808
Number of extensions: 202060
Number of successful extensions: 473
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)