Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C09
         (416 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal p...    51   1e-06
CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.               51   1e-06
BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal...    51   1e-06
BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal...    51   1e-06
BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal...    51   1e-06
AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12 p...    51   1e-06
U16125-1|AAA95961.1|  905|Homo sapiens EAA3 protein.                   29   4.7  
AJ249208-1|CAC80546.1|  905|Homo sapiens glutamate receptor subu...    29   4.7  

>Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 precursor protein.
          Length = 138

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 23/46 (50%), Positives = 29/46 (63%)
 Frame = +2

Query: 278 TMASLTQMHKTGPHIKKRKSRNPLNGNPFAKGVVLKTLIKKPKKPN 415
           +MA+L QMH+ GP  +  +   P  G P  KGVVL T  +KPKKPN
Sbjct: 29  SMATLNQMHRLGPPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPN 74


>CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.
          Length = 138

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 23/46 (50%), Positives = 29/46 (63%)
 Frame = +2

Query: 278 TMASLTQMHKTGPHIKKRKSRNPLNGNPFAKGVVLKTLIKKPKKPN 415
           +MA+L QMH+ GP  +  +   P  G P  KGVVL T  +KPKKPN
Sbjct: 29  SMATLNQMHRLGPPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPN 74


>BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 23/46 (50%), Positives = 29/46 (63%)
 Frame = +2

Query: 278 TMASLTQMHKTGPHIKKRKSRNPLNGNPFAKGVVLKTLIKKPKKPN 415
           +MA+L QMH+ GP  +  +   P  G P  KGVVL T  +KPKKPN
Sbjct: 29  SMATLNQMHRLGPPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPN 74


>BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 23/46 (50%), Positives = 29/46 (63%)
 Frame = +2

Query: 278 TMASLTQMHKTGPHIKKRKSRNPLNGNPFAKGVVLKTLIKKPKKPN 415
           +MA+L QMH+ GP  +  +   P  G P  KGVVL T  +KPKKPN
Sbjct: 29  SMATLNQMHRLGPPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPN 74


>BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 23/46 (50%), Positives = 29/46 (63%)
 Frame = +2

Query: 278 TMASLTQMHKTGPHIKKRKSRNPLNGNPFAKGVVLKTLIKKPKKPN 415
           +MA+L QMH+ GP  +  +   P  G P  KGVVL T  +KPKKPN
Sbjct: 29  SMATLNQMHRLGPPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPN 74


>AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12
           protein.
          Length = 138

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 23/46 (50%), Positives = 29/46 (63%)
 Frame = +2

Query: 278 TMASLTQMHKTGPHIKKRKSRNPLNGNPFAKGVVLKTLIKKPKKPN 415
           +MA+L QMH+ GP  +  +   P  G P  KGVVL T  +KPKKPN
Sbjct: 29  SMATLNQMHRLGPPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPN 74


>U16125-1|AAA95961.1|  905|Homo sapiens EAA3 protein.
          Length = 905

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
 Frame = +2

Query: 134 NLLRRGFSLLTTGLKTQCTQIQAISQLS---NLVLAPQIQTFSLASHLISRTMASLTQMH 304
           N LR+ F L    LK + T+   I   +   N+  + + ++ ++   L +RT+   T + 
Sbjct: 382 NGLRKDFDLDIISLKEEGTEKIGIWNSNSGLNMTDSNKDKSSNITDSLANRTLIVTTILE 441

Query: 305 KTGPHIKKRKSRNPLNGNPFAKGVVLKTL 391
           +  P++  RKS  PL GN   +G  L  L
Sbjct: 442 E--PYVMYRKSDKPLYGNDRFEGYCLDLL 468


>AJ249208-1|CAC80546.1|  905|Homo sapiens glutamate receptor subunit
           GluR5 protein.
          Length = 905

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
 Frame = +2

Query: 134 NLLRRGFSLLTTGLKTQCTQIQAISQLS---NLVLAPQIQTFSLASHLISRTMASLTQMH 304
           N LR+ F L    LK + T+   I   +   N+  + + ++ ++   L +RT+   T + 
Sbjct: 382 NGLRKDFDLDIISLKEEGTEKIGIWNSNSGLNMTDSNKDKSSNITDSLANRTLIVTTILE 441

Query: 305 KTGPHIKKRKSRNPLNGNPFAKGVVLKTL 391
           +  P++  RKS  PL GN   +G  L  L
Sbjct: 442 E--PYVMYRKSDKPLYGNDRFEGYCLDLL 468


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,128,237
Number of Sequences: 237096
Number of extensions: 871664
Number of successful extensions: 1737
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)