Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C09
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    37   0.007
Z68114-4|CAA92159.1|  324|Caenorhabditis elegans Hypothetical pr...    31   0.25 
Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...    31   0.44 
Z48621-12|CAA88545.2|  425|Caenorhabditis elegans Hypothetical p...    29   1.0  
U80839-7|AAB37915.1|  306|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF039048-7|AAB94234.2|  688|Caenorhabditis elegans Hypothetical ...    28   2.4  
AF022975-3|AAB70674.1|  548|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical ...    27   7.2  
U80455-1|AAB37881.1|  584|Caenorhabditis elegans Elav-type rna b...    26   9.5  
U53931-1|AAA98566.1|  584|Caenorhabditis elegans elav-type ribon...    26   9.5  
EF523766-1|ABS18832.1|  584|Caenorhabditis elegans ELAV-type RNA...    26   9.5  

>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
 Frame = +2

Query: 302 HKTGPHIKKRKSRNP--LNGNPFAKGVVLKTLIKKPKKPN 415
           ++ GP  ++ +S++   ++G    KG+VLKT+I+ PKKPN
Sbjct: 53  YRNGPPKRRARSKDKSAISGYSHYKGIVLKTVIRHPKKPN 92


>Z68114-4|CAA92159.1|  324|Caenorhabditis elegans Hypothetical
           protein F17A2.6 protein.
          Length = 324

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
 Frame = +2

Query: 134 NLLRRGFSLLTTGLKTQCTQIQAISQLSNLVLAPQIQTFSLASHLISRTMASLTQMHKTG 313
           N +R  + L+   +K        +  L+  VLA Q+    ++S ++   +  L+   K  
Sbjct: 160 NEIRERYKLINVDVKDH----SVVGTLNFKVLASQVNVCIMSSSVVMLPIIGLSSRRKLL 215

Query: 314 PHIKKRKSRNPLNGNP----FAKGVVLKTLI 394
            HI+K   R     N     F KGV+L+T +
Sbjct: 216 EHIQKTSDRVSQTKNSQNKMFVKGVILQTFL 246


>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 317 HIKKRKSRNPLNGNPFAKGVVLKTLIKKPKKPN 415
           HI  R   NP  G   AKG+VL+ +  + K+PN
Sbjct: 31  HIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPN 63


>Z48621-12|CAA88545.2|  425|Caenorhabditis elegans Hypothetical
           protein R07B1.8 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 294 VKEAIVLLMRCEARLNVCICGAKTRFDNCDIACICVHCV 178
           +++  V  M  ++RL  C+CG + ++DN D+    + CV
Sbjct: 248 LRQQSVCRMNDKSRLRSCLCGVREQYDN-DVQAGILQCV 285


>U80839-7|AAB37915.1|  306|Caenorhabditis elegans Hypothetical
           protein ZC204.9 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 142 KTRVFSANHRLKDAMYTNTSNITIIKPSLSATNTNI 249
           K  VFS    L D + +N S+I I + SLS  N NI
Sbjct: 190 KLSVFSTTMTLDDLLLSNCSDIAIGRNSLSHKNRNI 225


>AF039048-7|AAB94234.2|  688|Caenorhabditis elegans Hypothetical
           protein F16B4.3 protein.
          Length = 688

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 282 IVLLMRCEARLNVCICGAKT---RFDNCDIACICVHCVFKPVVSREN 151
           I   + C   L+V   G  T   R++  +++  C+HC  + ++S+EN
Sbjct: 420 IFFCIACSKALHVLCGGLLTEDQRYEALELSAKCIHCKEETILSKEN 466


>AF022975-3|AAB70674.1|  548|Caenorhabditis elegans Hypothetical
           protein K09C6.8 protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
 Frame = +2

Query: 131 MNLLRRGFSLLTTGLKTQCTQIQAISQLSNLVLAPQIQTFSLASHLISRTMASLTQMHKT 310
           M ++R G  L    + TQ       S L  +V    +  FS + HLI +T   ++ +HK 
Sbjct: 134 MRVMRYGQYLNLQYILTQEVGYLLSSDLGFIVQNTTLDLFS-SVHLIQQTFYCISDLHKI 192

Query: 311 G-PHIKKRKSRNPLNGNPFAKGVVLKTLIKKPKKPN 415
           G  H+  R S   L  N  A  VVL +      + N
Sbjct: 193 GYTHLDIRPSSFSLLRNNKAV-VVLNSFFNSETRQN 227


>AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical
           protein W09G12.7 protein.
          Length = 368

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 314 PHIKKRKSRNPLNGNPFAKGVVLKTLIKKPKK 409
           P  KK+KS+ P       + V +K +IKKPKK
Sbjct: 189 PKKKKKKSKKPKKAPKSDEEVTIK-IIKKPKK 219


>U80455-1|AAB37881.1|  584|Caenorhabditis elegans Elav-type rna
           binding protein familyprotein 1, isoform a protein.
          Length = 584

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 245 TFSLASHLISRTMASLTQMHKTGPHIKKRKSRNPLNGNP 361
           T S ASH   +    L+Q  +   H +++   NPL GNP
Sbjct: 340 TSSSASHHHQQHQQQLSQQQQQQQHPQQQGLGNPLLGNP 378


>U53931-1|AAA98566.1|  584|Caenorhabditis elegans elav-type
           ribonucleoprotein protein.
          Length = 584

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 245 TFSLASHLISRTMASLTQMHKTGPHIKKRKSRNPLNGNP 361
           T S ASH   +    L+Q  +   H +++   NPL GNP
Sbjct: 340 TSSSASHHHQQHQQQLSQQQQQQQHPQQQGLGNPLLGNP 378


>EF523766-1|ABS18832.1|  584|Caenorhabditis elegans ELAV-type RNA
           binding protein variantA protein.
          Length = 584

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 245 TFSLASHLISRTMASLTQMHKTGPHIKKRKSRNPLNGNP 361
           T S ASH   +    L+Q  +   H +++   NPL GNP
Sbjct: 340 TSSSASHHHQQHQQQLSQQQQQQQHPQQQGLGNPLLGNP 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,555,322
Number of Sequences: 27780
Number of extensions: 157166
Number of successful extensions: 390
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)