Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_C08
(607 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32) 28 5.1
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13) 28 5.1
SB_20314| Best HMM Match : RVT_1 (HMM E-Value=1e-32) 28 6.7
SB_14968| Best HMM Match : IL3 (HMM E-Value=8.6) 28 6.7
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 6.7
SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7) 27 8.9
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039) 27 8.9
>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1778
Score = 33.9 bits (74), Expect = 0.10
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
Frame = +2
Query: 140 TSSRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVY- 316
T V+ + + TIN + +K + GN + L A S N K G + Y
Sbjct: 658 TIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDKDVVISYS 714
Query: 317 DNVNRHGATLTNTH-IPGIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNT 493
DN+N A T+ IPG K KVN + + A + T SH ++
Sbjct: 715 DNMNNSKAANTDQFGIPGSDSKTGSDSKVNAKASGQTSNAMDASNSDTRETSSHAIGSDQ 774
Query: 494 VG 499
+G
Sbjct: 775 IG 776
>SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1293
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -2
Query: 288 NLIWLVRSTEPRALSL*FSFPVIGTLTIAPEVPSELIVS 172
NL + S PR LS FP +G+ TI P S +IVS
Sbjct: 1187 NLDGVDSSVMPRELSQVLRFPFLGSFTIRPLAQSSVIVS 1225
>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
Length = 808
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 365 GIGDKLSVAGKVNLFHNNDHDLSAKAFAT 451
G+ D L++ G VN+FHN DL++++ +T
Sbjct: 612 GLSD-LTIDGHVNIFHNQGTDLNSQSGST 639
>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
Length = 916
Score = 28.3 bits (60), Expect = 5.1
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +2
Query: 179 INSDGTSGAMVKVPITGN-ENHKLSALGSVD----LTNQIKLGAATAGLVYDNVNRHGAT 343
I+SD + ++V +GN +N LS + S N I +T+ L + N HG+T
Sbjct: 632 ISSDYHGDSSLRVHSSGNHDNTSLSGVSSGSHGNFSGNGIYRSRSTSNLSHGN---HGST 688
Query: 344 LTNTHIPGIGDKLSVAGKVNLFHNN 418
T GI L+ N FH N
Sbjct: 689 TTRNMSSGIQSNLAFGRLSNGFHEN 713
>SB_20314| Best HMM Match : RVT_1 (HMM E-Value=1e-32)
Length = 1556
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 401 NLFHNNDHDLSAKAFAT-RNMPTISHLPST-NTVGGGLEYMFKDKIGASASAXHTDFFNK 574
NL +D+++ T ++M + PST N GL+ + GAS S D F++
Sbjct: 513 NLTFKKAYDIASSMETTAQHMADLQSAPSTLNVELNGLKVQMELDTGASLSVIGEDIFDQ 572
Query: 575 NDYXLGGKLNL 607
G LNL
Sbjct: 573 LKNIEGSSLNL 583
>SB_14968| Best HMM Match : IL3 (HMM E-Value=8.6)
Length = 321
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +2
Query: 407 FHNNDHDLSAKAFATRNMPTISHLPSTNTVGGGLEYMFKDKIGASASAXHTDFFNKNDY 583
F N D++ + H P N GGG+ +FKD + ++ + FN ++
Sbjct: 224 FKNGDYNSAEMGTLCPTGYRFLHSPRLNARGGGVALLFKDLLRLEINSRICEHFNTFEF 282
>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1706
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +3
Query: 402 TCFITTTMIYPRRRSRPEICPPFPIYHQPTLLVVVSNICSRTRSVHQRAP 551
TC T Y R R C PF + T V SN C TR+ + P
Sbjct: 26 TCRFETC--YERDTGRATPCMPFTSFMSLTRNVTTSNTCGTTRAKYCELP 73
>SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 476 NGKWWAYFWSRTPSRINH 423
N +WW Y + RTP H
Sbjct: 13 NSEWWMYLYHRTPEGATH 30
>SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)
Length = 733
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 488 WLMVNGKWWAYFWSRTPSRINHG 420
WL+ N W FW+ P +HG
Sbjct: 165 WLLSNTNWMRKFWTSDPKFRSHG 187
>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
Length = 685
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 279 WLVRSTEPRALSL*FSFPVIGTLTIAPEVPSELIV 175
W+V ++EP LS +I T +I P P I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,482,472
Number of Sequences: 59808
Number of extensions: 374981
Number of successful extensions: 903
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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