Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_C06
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 29 0.63
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 29 0.63
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.1
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 27 1.5
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 27 1.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 4.4
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 5.9
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 25 5.9
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 5.9
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz... 25 5.9
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 7.7
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 28.7 bits (61), Expect = 0.63
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 63 MPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKV 170
+PPS+ +YP Y FS AR R V K+I G++
Sbjct: 667 VPPSHNGQYPGLYLFSNPARMVRPV---KHISTGEL 699
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 28.7 bits (61), Expect = 0.63
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -2
Query: 322 LPPKFEVSP--AGPKTLVPYACPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLP 155
+P KF ++P A + P + +S+ + + A+P P +F P V N PLP
Sbjct: 143 VPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPNSHNAVPFTPHAFVPPVNNASPLP 200
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.1
Identities = 36/111 (32%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Frame = -2
Query: 472 PIVLSDPPADKRVFLSKFH---TPAPLADRFGLPPICLLI--SRAAFAFLLDQSNLPP-K 311
PIV+ D LSK T +PL D PP+ ++ S + LLD ++
Sbjct: 157 PIVIPDDNEQVASPLSKKAASLTSSPLKDFQSSPPLSTVLQKSHSLHDILLDTNDDDHFP 216
Query: 310 FEVSPAGPKTLVPYACPSNLPRSSLKNCRVYPALP-NNPSSFCPSVPNTFP 161
F SP A S+ S LK C A P +N S PS PN FP
Sbjct: 217 FTQSPLTKTKSFNDALTSS--SSILKPCMPSIASPTSNRLSHAPSTPNLFP 265
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 285 LGPAGDTSNFGGRLDWSNKNANAALDISKQIGGRPNLSASGA 410
L P G S FGGR+ + N A +S + N+++S A
Sbjct: 427 LNPTGRPSRFGGRVRGNPLTMNKAGSVSDLLSTSTNMASSDA 468
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.1 bits (57), Expect = 1.9
Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 2/103 (1%)
Frame = +3
Query: 183 GQNDDGLFGKAGYTRQFFNDDRGK--LEGQAYGTRVLGPAGDTSNFGGRLDWSNKNANAA 356
G N FG G Q G +G ++ FGG +
Sbjct: 3 GLNKTPSFGSTGTQNQNTGTSAGTGLFSSNTFGNNTQANTPASTGFGGVTGGAFGQTKPQ 62
Query: 357 LDISKQIGGRPNLSASGAGVWNFDKNTRLSAGGSLSTMGRGKP 485
S G +PN +++ G+ F +N + + GGSL KP
Sbjct: 63 TGGSL-FGNKPNATSTTPGLNLFGQNPQAAPGGSLFGASTTKP 104
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -2
Query: 304 VSPAGPKTLVPYACPSNLPRSSLKNCRVYPALPNNP-SSFCPSVPNTFP 161
V P P + PS+ P ++ PA+PN P S PSV P
Sbjct: 1458 VQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPP 1506
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -2
Query: 223 VYPALPNNPSS-FCPSVPNTFP 161
V P +P +PSS F P P TFP
Sbjct: 306 VSPNIPVSPSSSFVPMYPTTFP 327
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 319 PPKFEVSPAGPKTLVPYACPSNLPRSSLKNCRVYPAL 209
PP+F S AG + PS+L SS+ + RV P++
Sbjct: 143 PPQFFHSEAGERPTPSVGAPSSL-ASSMDSVRVAPSM 178
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 218 SSFTE*SIVILSECTEYFSVAY 153
S FTE S + SEC YF+ +
Sbjct: 1273 SDFTEDSFTLTSECLRYFNYGH 1294
>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 265
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = -2
Query: 334 DQSNLPPKFEVSPAGPKTLVPYACPSNLPRSSLKNCR-VYPALPNNPSSFCPSVPNTF 164
+++N+PP P GP + P+ K R +P P+N P + F
Sbjct: 207 NRTNIPPGARYDPTGPGDFRGFGRDERKPQFPFKGPRSQFPGEPDNDDFMPPGSSDMF 264
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 514 LEIGPWNATSGFPRPIVLSDPPADKRVFLSKFHTPAPLADRFGLPP 377
+++G + +P+P L D K F S ++PAP R LPP
Sbjct: 331 VDVGAAGSHFPYPQPSNL-DAINAKTYFQSSSNSPAPYVYRNNLPP 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,390
Number of Sequences: 5004
Number of extensions: 58364
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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