Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C06
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical...    29   2.3  
Z81564-6|CAB04572.1|  678|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z81097-10|CAB03169.1|  492|Caenorhabditis elegans Hypothetical p...    28   4.1  
U41023-2|AAA82341.1|  335|Caenorhabditis elegans Sphingomyelin s...    28   4.1  
DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like...    28   4.1  
AF016853-1|AAB94552.1|  678|Caenorhabditis elegans HMP-2 protein.      28   4.1  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    28   5.4  
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    27   7.1  
U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    27   9.4  

>AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.5 protein.
          Length = 121

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 54  QVSMPPSYKERYPEYY-KFSKQARHPRDVTWDK 149
           +V +PP+  ER  +Y  KFS   RHP    W K
Sbjct: 4   EVEVPPTTYERLQQYKEKFSDALRHPDSPDWYK 36


>Z81564-6|CAB04572.1|  678|Caenorhabditis elegans Hypothetical
           protein K05C4.6 protein.
          Length = 678

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 290 TQNPGAVCLPFQLTAIV--IEKLPRVSSFTE*SIVILSECTEYFSVA 156
           T+N   VC    + A+V  I +LP V   TE ++  L  CT   S+A
Sbjct: 362 TRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCALRHCTARHSLA 408


>Z81097-10|CAB03169.1|  492|Caenorhabditis elegans Hypothetical
           protein K07A1.8 protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 339 KNANAALDISKQIGGRPNLSASGAGVW 419
           ++ N  +DI+ +IGG+  + A G G+W
Sbjct: 83  ESENFQVDIALKIGGQGRVGADGLGIW 109


>U41023-2|AAA82341.1|  335|Caenorhabditis elegans Sphingomyelin
           synthase protein 2 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 421 TLTRTLAYQLADH*ALWDAGSLMSRSKVQFPARFLKRMWWF 543
           T+   +AY L  H   W    +    K   P   L R+WWF
Sbjct: 255 TMDVLIAYWLTSH-VFWSYHQIFEMRKDDRPQAPLSRLWWF 294


>DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like
           protein protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 339 KNANAALDISKQIGGRPNLSASGAGVW 419
           ++ N  +DI+ +IGG+  + A G G+W
Sbjct: 83  ESENFQVDIALKIGGQGRVGADGLGIW 109


>AF016853-1|AAB94552.1|  678|Caenorhabditis elegans HMP-2 protein.
          Length = 678

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 290 TQNPGAVCLPFQLTAIV--IEKLPRVSSFTE*SIVILSECTEYFSVA 156
           T+N   VC    + A+V  I +LP V   TE ++  L  CT   S+A
Sbjct: 362 TRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCALRHCTARHSLA 408


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -2

Query: 502 PWNATSGFPRPIVLSDPPADKRVFLSKFHTPAPLADRFGLPPICLLISRAAFAFLLD 332
           P ++T   P P+ ++ PPA KR    +  T  P+  + G PP+   + R++ + L D
Sbjct: 49  PSSSTENEPPPVSVTSPPARKRAL--EESTVTPIQQKIG-PPV---LKRSSLSKLAD 99


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
 Frame = -2

Query: 514  LEIGPWNATSGFPRPIVLSDPPADKRVF---LSKFHTPAPLADRFGLPPICLLISRAAFA 344
            + I P    +  P P   S  PA        LS +  P PL    GLPP+         A
Sbjct: 1961 MHIPPVTRATSPPPPAQKSPQPAPFHSITEPLSDYPVPPPLGSLVGLPPMP--------A 2012

Query: 343  FLLDQSNLPPK-FEVSP 296
            +L   S+LPP+   VSP
Sbjct: 2013 YLSSNSSLPPQHHHVSP 2029


>U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical
           protein C01B10.6b protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = -2

Query: 292 GPKTLVPYA-CPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLPM 152
           G   L PY  C  N+      +C   P   + P   CP    T P P+
Sbjct: 364 GQNALSPYGVCYKNICSDQCFSCACSPGAKSPPDQSCPKPSPTDPTPV 411


>U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical
           protein C01B10.6a protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = -2

Query: 292 GPKTLVPYA-CPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLPM 152
           G   L PY  C  N+      +C   P   + P   CP    T P P+
Sbjct: 367 GQNALSPYGVCYKNICSDQCFSCACSPGAKSPPDQSCPKPSPTDPTPV 414


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
            autosome protein2 protein.
          Length = 1758

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -2

Query: 322  LPPKFEVSPAGPKTLVPYACPSNLPRSSLKNCRVYPALP---NNPSSFCPSVPNTFPLP 155
            LPP   + P  P      A P N PR++L   ++ P  P    +PS    S P T  +P
Sbjct: 1278 LPPANTIMPPPPPYNQASAVPLNPPRTALPPLQLPPLQPLQSESPSWASMSAPPTALIP 1336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,771,810
Number of Sequences: 27780
Number of extensions: 348304
Number of successful extensions: 1038
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)