Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_C05
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.22
SPAC664.08c |||traub transciption factor family protein |Schizos... 29 0.52
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.68
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 29 0.68
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 28 1.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 28 1.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 28 1.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 28 1.2
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 1.6
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 2.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 2.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 2.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 2.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 2.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 2.7
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 3.6
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 3.6
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 26 4.8
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 25 6.3
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 25 6.3
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ... 25 8.4
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.3 bits (65), Expect = 0.22
Identities = 27/136 (19%), Positives = 54/136 (39%)
Frame = +3
Query: 180 ASAPTVTSLNTKDFPFITSALGNDHVLTRSVWANGRWTMSSVPRISPTRRTHQLSLNSST 359
++APT TS + + S+ + + S + + SS+P S + + SL+SS+
Sbjct: 199 SAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSS 258
Query: 360 SMMIPQDTKLSALDPTASDWASASQTKIYLKRSALGCTTSGWASGFPCXXXXXXXXXXXX 539
S + S+ ++S +S+S T S+ ++S S
Sbjct: 259 SSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFS 318
Query: 540 XXXXGNGSAASSTSDS 587
+ ++SS+ S
Sbjct: 319 STLSSSSMSSSSSFSS 334
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 29.1 bits (62), Expect = 0.52
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 272 LGKRSVDDELGA--EDLPNETDPPALSELFDEYDDTAGYE 385
+GK S+ DEL P E DP AL + F + +D++ E
Sbjct: 1 MGKVSLKDELAGMLNPQPQERDPEALEDAFSDREDSSEEE 40
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 28.7 bits (61), Expect = 0.68
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 425 RIADEDLSEEKRA--RMYDFGLGKRLPMYNFGLGKRAYSYNFGLGKRLSSKFNFGL 586
++ DE++ +EK+ R D G G P F + S+N+ G + SK NFGL
Sbjct: 566 KVLDEEIIQEKQLVIRFEDCGGGIPSPAIKF----QDVSFNYPGGPTIFSKLNFGL 617
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 28.7 bits (61), Expect = 0.68
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 125 PDEHSALEKRSPRYDFGLGKRAYSYVSEYKRLPVY-NFGLGKRSRPYSFGLGKRSVDD 295
PD H+A +K + F + + AY +S+ + +Y NFG ++ G +S ++
Sbjct: 37 PDRHTADQKAAAEEKFQIIQHAYEVLSDPSKKEIYDNFGEQGLKTDWNVGFPGKSAEE 94
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 164 YDFGLGKRAYSYVSEYKRLPVYNFGLGKRS 253
YDF KR SY +KR + N LGK S
Sbjct: 186 YDFLEDKRTASYGKTHKRFQLQNKNLGKES 215
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 164 YDFGLGKRAYSYVSEYKRLPVYNFGLGKRS 253
YDF KR SY +KR + N LGK S
Sbjct: 186 YDFLEDKRTASYGKTHKRFQLQNKNLGKES 215
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 164 YDFGLGKRAYSYVSEYKRLPVYNFGLGKRS 253
YDF KR SY +KR + N LGK S
Sbjct: 186 YDFLEDKRTASYGKTHKRFQLQNKNLGKES 215
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 164 YDFGLGKRAYSYVSEYKRLPVYNFGLGKRS 253
YDF KR SY +KR + N LGK S
Sbjct: 186 YDFLEDKRTASYGKTHKRFQLQNKNLGKES 215
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 1.6
Identities = 31/142 (21%), Positives = 58/142 (40%)
Frame = +3
Query: 162 GTTSDLASAPTVTSLNTKDFPFITSALGNDHVLTRSVWANGRWTMSSVPRISPTRRTHQL 341
GT S + AP++ T FITS+ + S ++ SS + S + ++
Sbjct: 125 GTISSTSIAPSMIGTRTSSSYFITSSSSTP---SSSSSSSSSSPSSSSSKSSSSSKSSSS 181
Query: 342 SLNSSTSMMIPQDTKLSALDPTASDWASASQTKIYLKRSALGCTTSGWASGFPCXXXXXX 521
S +SS S + S+ ++S +SAS + K S+ ++S S P
Sbjct: 182 SSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSS--SKSSSKFSSSSFITSTTPASSSSSG 239
Query: 522 XXXXXXXXXXGNGSAASSTSDS 587
+ S+++S++ S
Sbjct: 240 AIVSNAKTASTDDSSSASSATS 261
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 164 YDFGLGKRAYSYVSEYKRLPVYNFGLGKRS 253
YDF KR SY +KR N LGK S
Sbjct: 186 YDFLEDKRTASYGKTHKRFQPQNKNLGKES 215
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 164 YDFGLGKRAYSYVSEYKRLPVYNFGLGKRS 253
YDF KR SY +KR N LGK S
Sbjct: 186 YDFLEDKRTASYGKTHKRFQPQNKNLGKES 215
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 164 YDFGLGKRAYSYVSEYKRLPVYNFGLGKRS 253
YDF KR SY +KR N LGK S
Sbjct: 186 YDFLEDKRTASYGKTHKRFQPQNKNLGKES 215
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 164 YDFGLGKRAYSYVSEYKRLPVYNFGLGKRS 253
YDF KR SY +KR N LGK S
Sbjct: 186 YDFLEDKRTASYGKTHKRFQPQNKNLGKES 215
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 164 YDFGLGKRAYSYVSEYKRLPVYNFGLGKRS 253
YDF KR SY +KR N LGK S
Sbjct: 186 YDFLEDKRTASYGKTHKRFQPQNKNLGKES 215
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 164 YDFGLGKRAYSYVSEYKRLPVYNFGLGKRS 253
YDF KR SY +KR N LGK S
Sbjct: 186 YDFLEDKRTASYGKTHKRFQPQNKNLGKES 215
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 3.6
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Frame = +3
Query: 165 TTSDLASAPTVTSLNTKDFPFITSALGNDHVLTRSVWAN-GRWTMSS---VPRIS-PTRR 329
TT + T+TSL F + ++ +T ++ +N G T S+ +P + P++
Sbjct: 284 TTPSDSRPSTLTSLFNAFFSSMPDRPSSNEPMTSNLTSNSGSMTNSTSTDLPTSNLPSQN 343
Query: 330 THQLSLNSSTSMMIPQDTKLSALDPTASDWASASQTKI 443
+ S S+ P L P ++ W SQT I
Sbjct: 344 APARPVEPSPSIQPPNLLNLPTASPESTSWLPGSQTNI 381
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +2
Query: 164 YDFGLGKRAYSYVSEYKRLPVYNFGLGKRSRP 259
YDF KR SY +KR N LGK P
Sbjct: 186 YDFLEDKRTASYGKTHKRFQPQNKNLGKEFLP 217
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 291 TMSSVPRISPTRRTHQLSLNSSTSMMIPQDTKLSA 395
++SS+P + ++ T SLN S+ + P +T SA
Sbjct: 309 SVSSLPSLGASQTTDSSSLNQSSLLRRPANTYFSA 343
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 359 EYDDTAGYEVKRARPYSFGLGKRIADEDLSEEK 457
+ +D ++KRAR +FGLG I D + EEK
Sbjct: 351 DLNDEESLQLKRARYDTFGLG-NIKDLEEEEEK 382
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 207 NTKDFPFITSALGNDHVLTRSVWANGRWTMSSVPRISPTRRTHQLSLNSSTS 362
N +FP + S+LG++H + NG S+ P + T H ++ NSS S
Sbjct: 132 NAANFPSVPSSLGSNHQFITTPPVNG----SNEPTSAQT--NHIITANSSPS 177
>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 179
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 272 LGKRSVDDELGAEDLPNETDPPALSE 349
LGK+ ++ E G E E++PP L E
Sbjct: 116 LGKQLLEKEEGKEKTREESNPPVLVE 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,149
Number of Sequences: 5004
Number of extensions: 40689
Number of successful extensions: 165
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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