Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_C05
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911... 29 2.1
10_08_0612 - 19228262-19228570,19229955-19230404 29 2.8
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701... 28 4.9
01_06_1514 - 37892552-37893074,37893291-37893367,37893471-378935... 28 4.9
11_06_0377 - 22900042-22900452,22900527-22902236 28 6.5
08_02_0860 + 21970888-21971833,21973400-21974127 28 6.5
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 28 6.5
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 28 6.5
08_01_0848 + 8321717-8322198,8322297-8322687 27 8.6
06_03_0933 + 26067109-26067232,26067334-26067486,26068929-260692... 27 8.6
05_01_0398 + 3142934-3143110,3143697-3143930,3144180-3144353,314... 27 8.6
>01_06_1171 -
35089719-35090336,35090596-35090715,35090851-35091108,
35091934-35092563
Length = 541
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 318 PTRRTHQLSLNSSTSMMIPQDTKLSALDPTAS 413
P+R H LS SSTS ++P T + DP S
Sbjct: 492 PSRNQHLLSPRSSTSALLPPRTSCALDDPRVS 523
>10_08_0612 - 19228262-19228570,19229955-19230404
Length = 252
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 434 DEDLSEEKRARMYDFGLGKRLPMYNFGLGKRAY--SYNFGLGKRLSSK 571
+ED EE AR F L RLP + +R SY GLGKRL S+
Sbjct: 78 EEDEEEEAEARPTTFVL-PRLPRPKLSVKERKELASYAHGLGKRLKSQ 124
>03_02_0270 -
7011363-7012302,7013237-7013640,7014264-7014333,
7014835-7015331,7015959-7016283,7018060-7018292
Length = 822
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 498 GSRLPNPKSYIRARFSSDKSSSAMRLPSPKL*G 400
GS LPN RAR + + S+ RLP+P + G
Sbjct: 626 GSGLPNLAPPARARLARSQQSALWRLPTPMVFG 658
>01_06_1514 -
37892552-37893074,37893291-37893367,37893471-37893587,
37893826-37893926,37895077-37895146,37895318-37895415,
37896326-37896419,37896792-37896882,37897222-37897547,
37898193-37898278,37899078-37899417
Length = 640
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 252 HVLTRSVWANGRWTMSSVPRISPTRRTHQLSLN 350
H+++RS ANG + P SPT+R H ++L+
Sbjct: 507 HLISRSKSANGERSPIKSPVRSPTQRGHTITLS 539
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 218 LPVYNFGLGKRSRPYSFGLGKRSVDD--ELGAEDLPNETDPPALSELFDE 361
LP+ G+G R+R Y GLG+ + E+ +D D AL EL DE
Sbjct: 494 LPLPGLGVGGRARLYGEGLGREDDAERLEVAVDDAEGGVDLGAL-ELQDE 542
>08_02_0860 + 21970888-21971833,21973400-21974127
Length = 557
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -3
Query: 346 RESWWVRLVGEILGTELIV-HRPFAQTERVRT*SFPKAEV-INGKSFVFRDVT 194
++ W + LVG+ +G +I HR + +F A V +NGK F+ RDVT
Sbjct: 280 KKKWNLMLVGDGMGVTVISGHRNYVDGYT----TFRSATVAVNGKGFMARDVT 328
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = +2
Query: 95 PHEHDRGEHEPDEHSALEKRSPRYDF---GLGKRAYSYVSEYKRLP 223
PH D G +EHS E S Y+ K YV+E K P
Sbjct: 500 PHSEDSGSDSSEEHSDSEDSSQSYEHINTNQNKTGAKYVNEKKCKP 545
>01_01_0020 +
147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 47 VCLLVLGAVLSAPE-RVPHEHDRGEHEPDEHSA 142
V + GA L P PHEH +G+ +PD H A
Sbjct: 226 VASTIKGAKLKQPSGNKPHEH-KGKDQPDHHGA 257
>08_01_0848 + 8321717-8322198,8322297-8322687
Length = 290
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 216 DFPFITSALGNDHVLTRSVWANG 284
D F+ + GN +V+ +VWANG
Sbjct: 108 DIEFMGNLSGNPYVMNTNVWANG 130
>06_03_0933 +
26067109-26067232,26067334-26067486,26068929-26069279,
26069375-26069451,26069665-26070982,26071948-26072009,
26072253-26072309
Length = 713
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = +2
Query: 194 SYVSEYKRLPVYNFGLGKRSRPYSFGLGKRSVDDELGAEDLPNETDPPALSELFDEYDDT 373
S+ + + P++ L + P + DD++G+ ++ N+T P + + D +
Sbjct: 553 SFAASSGQEPMFGDELHGQMSPIMSTISLSDFDDQMGSFNIGNDTSPAEM--MHDNFSLG 610
Query: 374 AGYEVKRARPYSFGLGKRIADEDL-SEEKRARMYDFG 481
+ + + P G D L S E A+M + G
Sbjct: 611 SDSNISSSTPTDSSFGSTFPDFHLDSPEMPAQMLNGG 647
>05_01_0398 + 3142934-3143110,3143697-3143930,3144180-3144353,
3144450-3144554,3145274-3145351,3146019-3146100,
3146519-3146681,3147100-3147435,3147511-3147641,
3147687-3147729,3147826-3148444,3148523-3148588,
3149103-3149265,3149557-3149635,3150232-3150431,
3150972-3151144,3151466-3151559,3152353-3152444,
3153146-3153436
Length = 1099
Score = 27.5 bits (58), Expect = 8.6
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Frame = +2
Query: 92 VPHEH-DRGEHEPDEHSALEKRSPRYDFGLGKRAYSYVSEYKRLPVYNF-GLGKRSRPYS 265
VP E R + +P++ E+ GLG AY V L F G K P
Sbjct: 961 VPRERRKRNDEKPEKKQKREQHHDVSQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEI 1020
Query: 266 FGLGKRSVDDELGAEDLPNETDPPALSELFDEYDDTAGYEVKRARP 403
++ L ++LP+ET P L LF +Y + A+P
Sbjct: 1021 I-----VPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKP 1061
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,843,321
Number of Sequences: 37544
Number of extensions: 310739
Number of successful extensions: 1174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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