Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C05
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.043
SB_18882| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)                  30   1.6  
SB_59800| Best HMM Match : SPRY (HMM E-Value=7.8e-05)                  28   5.0  
SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017)                    28   6.6  
SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)           27   8.7  

>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 21/57 (36%), Positives = 25/57 (43%)
 Frame = +2

Query: 389 KRARPYSFGLGKRIADEDLSEEKRARMYDFGLGKRLPMYNFGLGKRAYSYNFGLGKR 559
           +R R   FG   R    +L    R R  DF   +R    +FG GKR    NFG  KR
Sbjct: 179 ERGRGIDFGRADRGRGINLGRSDRGRAIDFSRCERGRGMDFGRGKRGPGINFGRAKR 235



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 22/69 (31%), Positives = 29/69 (42%)
 Frame = +2

Query: 389 KRARPYSFGLGKRIADEDLSEEKRARMYDFGLGKRLPMYNFGLGKRAYSYNFGLGKRLSS 568
           +R+R    G G+R    D     R R  + G   R    +F   +R    +FG GKR   
Sbjct: 168 ERSRSMDLGRGERGRGIDFGRADRGRGINLGRSDRGRAIDFSRCERGRGMDFGRGKR-GP 226

Query: 569 KFNFGLGKR 595
             NFG  KR
Sbjct: 227 GINFGRAKR 235


>SB_18882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
 Frame = +3

Query: 165 TTSDLASAPTVTSLNTKDFPFITSALGNDHVLTRSVWANGRWTMSSVPRISPTRRTHQLS 344
           T+S +A     +SL  +  P  TS+L      TRS+ A G  T S + R SPT  +  ++
Sbjct: 76  TSSLIARGSPTSSLIARGSP--TSSLIARGSPTRSLIARGSPTSSLIARGSPT--SSLIA 131

Query: 345 LNSSTSMMIPQDTKLSAL----DPTASDWASASQTKIYLKRSA--LGCTTSGWASGFPC 503
             S TS +I + +  S+L     PT+S  A  S T   + R +        G  S +PC
Sbjct: 132 RGSPTSSLIARGSPTSSLIARGSPTSSLIARGSPTSSLIARGSPTSSLIARGTWSWYPC 190


>SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)
          Length = 659

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 269 GLGKRSVDD--ELGAEDLPNETDPPALSELF-DEYDDTAGYEVKRARPYSFGLGKRIADE 439
           G   R  DD  E   E  P   +P ++ +     +D  A   ++RA P+   +GK+ ADE
Sbjct: 39  GTSPRKPDDGPEFIREPSPQSREPVSVRQQAPSSHDVVAPNPIRRAPPHIPPIGKKPADE 98

Query: 440 DLSEE 454
           D   E
Sbjct: 99  DFESE 103


>SB_59800| Best HMM Match : SPRY (HMM E-Value=7.8e-05)
          Length = 1444

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +2

Query: 116  EHEPDEHSALEKRSPRYDFGLGKRAYSYVSEYKRLPVYNFGLGKRSRPYSFGLGKRSVDD 295
            E  PD+ +   K SP Y F LG    S    Y R+ V  F    +      G+ +  +DD
Sbjct: 1148 EMSPDDCTVALK-SPMYTFILGNVKLSSGRHYWRVHVDEFSSPNQLSIIGVGIARGIIDD 1206

Query: 296  ELGAED 313
             +  ED
Sbjct: 1207 PILGED 1212


>SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017)
          Length = 723

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
 Frame = +2

Query: 287 VDDELGAEDLPNETDPPALSELFDEYDDTAGYEVKRARPYSFGLGKRIADEDLSEEKRAR 466
           V+    AED+ +E D     E  DE  D    E K  +  +       A +   E+K   
Sbjct: 121 VEKRAAAEDV-SEDDDEKKDEDEDEKKDEGKDEKKHEKDCN--CKPEYAKDAKGEKKCCG 177

Query: 467 MYDFGLGKRLPMYNFGLGKR---AYSYNFGLGKRLSSKFNFGLG 589
            +  G G      ++G G      YSY +GLG    + + +GLG
Sbjct: 178 GFGLGFGGYGGYNSYGFGYPYGGLYSYGYGLGYPGYAGYGYGLG 221


>SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)
          Length = 398

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +2

Query: 128 DEHSALEKRSPRYDFGLGKRAYSYVSEYKRLPVYNFGLGKRSRPYSFGLGKRSVDDELGA 307
           +E   +E+ +   + GLG+ A  ++     L    +G G R   Y +G+ K+ +DD+   
Sbjct: 156 EELEEMEEDAGLGNGGLGRLAACFLDSMATLGYPAYGYGIR---YEYGIFKQEIDDKGNQ 212

Query: 308 EDLPNE 325
            + P+E
Sbjct: 213 VEHPDE 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,652,588
Number of Sequences: 59808
Number of extensions: 330995
Number of successful extensions: 1218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)