Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C05
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.56 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   6.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.2  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -2

Query: 386 LRILRYHHTRRRVQR--ELVGPSRWGDPRHRAHRPPTVCPDRTSKDVIVSQGRSYKREVF 213
           +R+LR     R V +  E+  P      RH   R     PDRTSKD    QG   + EVF
Sbjct: 217 VRLLRLSRLVRYVSQWEEVYIPLYQQPERHYERRATPPQPDRTSKD----QGTIGESEVF 272


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 321 TRRTHQLSLNSSTSMMIPQDTKLSALDPTASDWA--SASQTKIYLKRSAL 464
           T+R      NS+  + I +D KLS  D  A+  A  SAS T  + + S L
Sbjct: 154 TKRDVIYKWNSARQVAIAEDMKLSQFDLVANPTANYSASTTLSHAEYSML 203


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 488 CPTRSRTSERASLQINL 438
           CPT   T+ RAS+ I L
Sbjct: 270 CPTNLGTTVRASVHIKL 286


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 86  ERVPHEHDRGEHEPDEHSALEKRSPRY 166
           ++ P+ HD  + +P E   L K +  Y
Sbjct: 461 QQFPYVHDTLQIQPQEQLTLSKVTSNY 487


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 269 GLGKRSVDDELGAEDLPNETDP 334
           GLG      + G  DLP ET P
Sbjct: 277 GLGHYGHHPDPGEVDLPPETQP 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,288
Number of Sequences: 438
Number of extensions: 3091
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)