Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C03
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    29   0.55 
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    25   5.1  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   6.7  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    25   6.7  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   8.9  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = +2

Query: 185 TTAVSSVKAGHSIDVVISGKTPEDKMAGILLEARQGDKI-VGTWTVSPDDTFSQPLNCGE 361
           TT   + ++G S DVV+     +D     L +A +  K  V   ++    +  +PL  GE
Sbjct: 423 TTDPINDESGASSDVVVIDDEEDDIENRPLNQALKASKAAVSNASLLQSSSLDRPL-LGE 481

Query: 362 PNNAVTHKMHAKELDRQTVSYPWT 433
             +   HK+    LD   +SYPW+
Sbjct: 482 MKDK-NHKVLMPSLDDPMLSYPWS 504


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 172 PLVLSEHQQRALGSCRSTR*AVLRWGKRW*AP 77
           PLV   H+   + +  S+     RWGKR+ AP
Sbjct: 14  PLVSLAHRNSKVFALASSNAVAQRWGKRFYAP 45


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 133 IPGHAADVQTVPAALHH 183
           IPGH ADV+T+  + +H
Sbjct: 392 IPGHRADVRTLALSANH 408


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +2

Query: 317 VSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTI 478
           ++P D   +PL   EP   VT  +  K      VS P  AP     DV F  +I
Sbjct: 67  LNPKDELEEPLFSEEPLFPVTTSIPTK----TAVSKPKIAPTSAAKDVTFSSSI 116


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 229 HVNGMTSFYRADSCSDGVRPLV 164
           HVN  T F R+ SC +  +PL+
Sbjct: 219 HVNRGTQFKRSSSCRNSRQPLL 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,807
Number of Sequences: 5004
Number of extensions: 48904
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)