Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C02
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    27   1.7  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   4.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   5.2  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    25   5.2  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   6.9  

>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 385 DPVLITNKRDELALKLELKTDYAG 456
           D + I NKR   ALK  LK +Y G
Sbjct: 231 DSIAILNKRGPYALKYSLKPEYKG 254


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 76  SLTPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIVSD--YKAAVKTTFQLEKECRSDVI 249
           +LTP   + A S  +  +PP +N +    + +   +++  +K+ V+T    E   +S+  
Sbjct: 205 TLTPYAEDYAFSSLNTSAPPLSNKEYAFSVNHLPAINEHKWKSRVETNMLFELRIKSNDN 264

Query: 250 SSV 258
            SV
Sbjct: 265 QSV 267


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 55  SALVTRVSLTPLCNNTAVSITSNDSPPFNNA 147
           S   T  S TPL +  + + TS  S PF N+
Sbjct: 544 STTATSASSTPLTSVNSTTATSASSTPFGNS 574



 Score = 24.6 bits (51), Expect = 9.1
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +2

Query: 161 SYTIASSSVTTRLLLKLPFN*KRNAEVTSSAPS*INYSSKDNQTSSNTLTVS 316
           S ++ASSS T+  L     N   +A  TSSA S    SS  +  +SN+ T S
Sbjct: 146 SSSLASSSTTSSSLASSSTNSTTSATPTSSATS----SSLSSTAASNSATSS 193



 Score = 24.6 bits (51), Expect = 9.1
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +1

Query: 52  LSALVTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIVSDYKAAVKTTF 216
           +S  VT  + TPL N+T    ++  S  FN    +     S  +S+   A  +TF
Sbjct: 597 VSGSVTTPTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTF 651


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 244 VISSVVNKLLLEGQPNVVEYAYSLWY 321
           V+    NK+ ++G+PNV     + WY
Sbjct: 22  VLIDAFNKVTIDGKPNVQHQQPTYWY 47


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = +1

Query: 52  LSALVTRVSLTPLCNNTAVSITSN------DSPPFNNADPVMQLYNSVIVSDYKAAVKTT 213
           L    ++VSL+P+ +  + S+T++       S P  +  P M+  +S + S  ++   + 
Sbjct: 293 LHTSASQVSLSPMASTASSSVTNSPVDTHTPSTPIMSRPPSMKALSSGVESQDESVASSN 352

Query: 214 FQL 222
           FQ+
Sbjct: 353 FQV 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,753
Number of Sequences: 5004
Number of extensions: 32174
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)