BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I09A02NGRL0001_C01 (509 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g22080.1 68417.m03193 pectate lyase family protein similar to... 31 0.34 At4g22090.1 68417.m03194 pectate lyase family protein similar to... 29 1.4 At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase... 28 3.2 At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protei... 27 7.3 At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu... 27 7.3 At5g45330.1 68418.m05564 expressed protein ; expression supporte... 27 9.7 At1g06840.1 68414.m00729 leucine-rich repeat transmembrane prote... 27 9.7 >At4g22080.1 68417.m03193 pectate lyase family protein similar to pectate lyase 2 GP:6606534 from [Musa acuminata] Length = 394 Score = 31.5 bits (68), Expect = 0.34 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Frame = +3 Query: 126 GALPKKPKELAHKEGCYIKEINDVVPFGTELKPIGHCYRITCGGSMID--YASCGVVATN 299 G + P + H++G + + + FG+ I HCY +C +ID +AS G+ +N Sbjct: 176 GMVRSSPTHVGHRKG---SDGDAIAIFGSSNIWIDHCYLASCTDGLIDVIHASTGITISN 232 Query: 300 D 302 + Sbjct: 233 N 233 >At4g22090.1 68417.m03194 pectate lyase family protein similar to pectate lyase 2 GP:6606534 from [Musa acuminata] Length = 394 Score = 29.5 bits (63), Expect = 1.4 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Frame = +3 Query: 126 GALPKKPKELAHKEGCYIKEINDVVPFGTELKPIGHCYRITCGGSMID--YASCGVVATN 299 G + P + H++G + + + FG+ I HCY +C +ID +AS + +N Sbjct: 176 GKVRSSPTHVGHRKG---SDGDAITIFGSSNVWIDHCYLASCTDGLIDVIHASTAITISN 232 Query: 300 D 302 + Sbjct: 233 N 233 >At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase, putative similar to SP|P55250 Fumarate hydratase, mitochondrial precursor (EC 4.2.1.2) (Fumarase) {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase Length = 510 Score = 28.3 bits (60), Expect = 3.2 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Frame = +3 Query: 66 VSKILIIS-MIVCTVNAAVWIGALPKKPKELAHKEGCYIKEINDVVPFG----TELKPI 227 +SK+L S M+V ++N + K AHKEGC +K N ++ F +E KPI Sbjct: 433 ISKLLHESLMLVTSLNPKIGYDNAAAVAKR-AHKEGCTLKVNNKLLTFSSLNKSEFKPI 490 >At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protein (LTI65) / desiccation-responsive protein 29B (RD29B) nearly identical to SP|Q04980 Low-temperature-induced 65 kDa protein (Desiccation-responsive protein 29B) {Arabidopsis thaliana} Length = 619 Score = 27.1 bits (57), Expect = 7.3 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +3 Query: 126 GALPKKPKELAHKEGCYIKEINDVVPFGTELKPI 227 G + KPK L+H + ++VP GT++ P+ Sbjct: 89 GGVTGKPKSLSHAGETNVPASEEIVPPGTKVFPV 122 >At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative similar to peptidyl-prolyl cis-trans isomerase PPIase (cyclophilin, cyclosporin A-binding protein) [Tomato] SWISS-PROT:P21568 Length = 232 Score = 27.1 bits (57), Expect = 7.3 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Frame = -1 Query: 287 NTTRSVINHASSTGNSVAMSD--GL-EFCSKRYHIIDFFYVAAFLMCQFLWFL 138 N + VI + V ++D GL + S+RY++I+ LMC + WF+ Sbjct: 180 NIEKEVIIKTAKDNKPVVIADCGGLSDDRSERYYLINIVVACMVLMCFWSWFV 232 >At5g45330.1 68418.m05564 expressed protein ; expression supported by MPSS Length = 571 Score = 26.6 bits (56), Expect = 9.7 Identities = 14/45 (31%), Positives = 19/45 (42%) Frame = +3 Query: 198 VPFGTELKPIGHCYRITCGGSMIDYASCGVVATNDEHCHVTEIDP 332 VP G KP+ I G +IDY S ++ D+ V P Sbjct: 221 VPLGMMQKPVSSSSTIPNGPQIIDYFSSPIMGLVDDSSQVVTRSP 265 >At1g06840.1 68414.m00729 leucine-rich repeat transmembrane protein kinase, putative similar to receptor protein kinase GB:BAA11869 GI:1389566 from [Arabidopsis thaliana] Length = 939 Score = 26.6 bits (56), Expect = 9.7 Identities = 14/47 (29%), Positives = 19/47 (40%) Frame = -1 Query: 365 DIRTAFRIWLLGVYLCDVAMFVICSDNTTRSVINHASSTGNSVAMSD 225 D+R +WL G LC + T IN S+ N+ SD Sbjct: 357 DLRPNVTVWLQGNPLCSDGNLLRLCGPITEEDINQGSTNSNTTICSD 403 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,072,949 Number of Sequences: 28952 Number of extensions: 232426 Number of successful extensions: 419 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 413 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 419 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 917929344 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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