Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B23
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   0.64 
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   2.6  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   3.4  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    25   3.4  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   3.4  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    24   4.5  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     24   4.5  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    24   4.5  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    24   5.9  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    23   7.9  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    23   7.9  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    23   7.9  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    23   7.9  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.1 bits (57), Expect = 0.64
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 98   MLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLD 211
            M+ +D EP +S C  LL  +     D + MVS  E  +
Sbjct: 1281 MVESDYEPDVSLCPELLSLAIDFPGDPFVMVSKMEKYE 1318


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 127  KSRLQVRRQHTCLRFSDIALAVIVAEDF 44
            K RLQ R  +   +FS + LAV+ A+ F
Sbjct: 1055 KKRLQKRLGYNDTQFSKVKLAVLQAQSF 1082


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 24/84 (28%), Positives = 37/84 (44%)
 Frame = +3

Query: 33  VAKAKSSATMTARAISENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWT 212
           +  AKSS +  +  I  +   V  L+T S L  S+PI  ++L A+  +     HS+    
Sbjct: 530 LTNAKSSLSTPSTTIPTSNSSVS-LQTSSSLIISSPIISSSLTATSTSTPALTHSITPSN 588

Query: 213 LIGRTLIIERSQT*KDSFLNCACS 284
               + +I  S T   S L   CS
Sbjct: 589 TSYTSSLIPSSSTDYSSSLITVCS 612


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 39  KAKSSATMTARAISENLKHVCCLRTWS 119
           K K+S     R   EN+ H+CC  T S
Sbjct: 45  KDKNSTLKIDRLFEENVPHLCCQVTAS 71


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 232 ISVRPINVQILIE*NHFICVS 170
           I  RPI   + I+  HFIC S
Sbjct: 197 IHARPIQTSVRIDTTHFICSS 217


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 173 DTYKMVSLNENLDIDRAHANYRAI 244
           D Y+++ +N + D+    ANYR +
Sbjct: 9   DCYEILQVNHDSDLQEIKANYRKL 32


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 244 DRSIISVRPINVQILIE*NHFIC-VSLDAGRFVQQMGAERKSR 119
           DRS+    PI++ +L+    FIC ++     F+     ER  R
Sbjct: 189 DRSLFKFYPIDLFVLLLSQSFICIIAFGVSDFINFQKEERNFR 231


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = +2

Query: 80   RESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKR 259
            +E + + L   +E   + C+ L  ++   Q D Y   + N++ + D        + NLK 
Sbjct: 1099 KEERRKELAIKIEQVTNSCSDLELRTNAEQ-DFY---AKNQDFEFDEIKRYEEQLLNLKN 1154

Query: 260  QFPQLRVFLTVGG 298
            +     V LT GG
Sbjct: 1155 ELGWTIVSLTAGG 1167


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 23  ASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALS 130
           A+P+S+ +VL Y  S+++   S    LP+   P+++
Sbjct: 556 ATPASRERVLPYTRSQAFHSTSLPPSLPSGHSPSIA 591


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 11   TNHPASPSSQSKVLCYYDSKSYIRESQARML 103
            TN+   PSS   ++   DS  + +ES+ + L
Sbjct: 1063 TNNTLEPSSVEAIVSSKDSDKHAKESKGKSL 1093


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 304 VITSHGQEHAQLRKLSFQVCDRSIISVRPINVQILIE*NHFICVSLDA 161
           ++  HGQE  +       + DR +I V P+N   +   N+ I   +DA
Sbjct: 641 IVQLHGQEPFEW----IHMLDRPVIKVFPLNSSEISRPNYHIVPLIDA 684


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 153 NLPASKLTHIKWFHSMRIWTLIGRTLIIE 239
           N   S L    W  ++RIW +  R+ I+E
Sbjct: 476 NSSGSLLASGSWDKTVRIWDIFSRSGIVE 504


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 148 QQMGAERKSRLQVRRQHTCLRF 83
           +++ + R+ RLQ  R H CL F
Sbjct: 127 RELNSHREKRLQDTRVHCCLFF 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,248,090
Number of Sequences: 5004
Number of extensions: 21629
Number of successful extensions: 84
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)