Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B23
(310 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa... 30 0.36
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR... 29 0.48
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 1.1
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa... 28 1.1
At4g37110.1 68417.m05256 expressed protein 28 1.5
At4g15075.1 68417.m02316 hypothetical protein 28 1.5
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 27 1.9
At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger) fa... 27 1.9
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof... 23 2.3
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1... 27 2.6
At5g57750.1 68418.m07219 zinc finger (C3HC4-type RING finger) fa... 27 3.4
At5g40070.1 68418.m04861 hypothetical protein contains similarit... 27 3.4
At3g48320.1 68416.m05273 cytochrome P450 71A21, putative (CYP71A... 27 3.4
At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger) fa... 26 4.5
At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger) fa... 26 4.5
At1g09740.1 68414.m01093 ethylene-responsive protein, putative s... 26 4.5
At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger) fa... 26 5.9
At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger) fa... 26 5.9
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 25 7.8
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 25 7.8
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 25 7.8
At4g00630.1 68417.m00087 K+ efflux antiporter, putative (KEA2) M... 25 7.8
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 25 7.8
At2g38120.1 68415.m04679 amino acid permease, putative (AUX1) id... 25 7.8
At2g21050.1 68415.m02499 amino acid permease, putative similar t... 25 7.8
At1g77690.1 68414.m09046 amino acid permease, putative similar t... 25 7.8
At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger) fa... 25 7.8
At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger) fa... 25 7.8
>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 401
Score = 29.9 bits (64), Expect = 0.36
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 24 HHLVAKAKSSATMTARAISEN-LKHVCCLRTWSLLFRSAPICCTNLPASKLT 176
H V K +AR + N + H C+ W + S P+C LPA LT
Sbjct: 200 HCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHELPAEDLT 251
>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1036
Score = 29.5 bits (63), Expect = 0.48
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 129 RSAPICCTNLPASKLTHIKWFHSM 200
RS PIC T P+S +H KW H +
Sbjct: 13 RSCPICATPFPSSSSSH-KWTHQV 35
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 104 PTDLEPALSFCTHLLYKSAG 163
PTD P+LSFC +Y S G
Sbjct: 321 PTDPNPSLSFCPSNIYSSTG 340
>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 423
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 93 HVCCLRTWSLLFRSAPICCTNLPASKLTH 179
HV C+ TW L + P+C +NL + +H
Sbjct: 150 HVECIDTWLLSHSTCPLCRSNLLSGFSSH 178
>At4g37110.1 68417.m05256 expressed protein
Length = 417
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 188 PFYMCQLGCRQICTADGCRTKEQAPSP*AAY-VLEIL*YSSCCH 60
P ++C + CR IC CRTK+ AAY + L Y S H
Sbjct: 228 PDWICPV-CRDICNCSFCRTKKGWLPTGAAYRKIHKLGYKSVAH 270
>At4g15075.1 68417.m02316 hypothetical protein
Length = 168
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 87 LKHVCCLRTWSLLFRSAP 140
L++ CCL+T ++LF+S P
Sbjct: 126 LRNACCLKTATILFKSTP 143
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 93 HVCCLRTWSLLFRSAPICCTNLPAS 167
HV C+ W L S P+C LP+S
Sbjct: 282 HVRCIVPWLELHSSCPVCRFELPSS 306
>At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 214
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 93 HVCCLRTWSLLFRSAPIC 146
H+CCL W L S P+C
Sbjct: 162 HLCCLDAWLKLNGSCPVC 179
>At5g42870.1 68418.m05225 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 930
Score = 23.0 bits (47), Expect(2) = 2.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 125 LSFCTHLLYKSAGIQADTYKMVSLNENLDIDR 220
LS C HLL S G+ A+ +E LD+++
Sbjct: 542 LSLCKHLL--SEGMGAEAASQAFNSEKLDMEK 571
Score = 22.6 bits (46), Expect(2) = 2.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 20 PASPSSQSKVLCYYDSKSYIRESQARMLPTDLE 118
P+ P SQS C+ SK +RE ++ D E
Sbjct: 486 PSQPLSQSFDPCFNTSKLDLREDESSSGGLDAE 518
>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P14714
Phytochrome C {Arabidopsis thaliana}
Length = 1111
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 267 GNCLFKFVIAR*LACARSMSKFSLSETILYVSAWMPADLYSRWVQNERAGSKSVG 103
G C+ VIAR A + M + L I++ + +P DL Q R G+ G
Sbjct: 1019 GLCVSFKVIARIEAIGKRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREG 1073
>At5g57750.1 68418.m07219 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL4 [Arabidopsis thaliana] GI:4928399; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 210
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 93 HVCCLRTWSLLFRSAPICCTNLPASKLT 176
HV C+ TW L + P+C NL LT
Sbjct: 146 HVECIDTWLLTNSTCPLCRDNLLLLGLT 173
>At5g40070.1 68418.m04861 hypothetical protein contains similarity
to hypothetical proteins of [Arabidopsis thaliana]
Length = 157
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 216 SMSKFSLSETILYVSAWMPADLYSRWVQNERAGSKSVG 103
S S +SL+ T L YS WVQN++ K+ G
Sbjct: 10 SSSSYSLASTSLSNRLETQEKRYSSWVQNKKKKKKNKG 47
>At3g48320.1 68416.m05273 cytochrome P450 71A21, putative (CYP71A21)
identical to Cytochrome P450 71A21 (SP:Q9STL2)
[Arabidopsis thaliana]
Length = 490
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +3
Query: 30 LVAKAKSSATMTARAISENLKHVCCLRTWSLLFRSAPICCTNLPASK 170
LVA SS + A++E L+H CLRT R+ IC NL S+
Sbjct: 290 LVAGTDSSYALMDWAMTELLRHPECLRTLQEEVRT--ICKGNLSVSE 334
>At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 235
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 93 HVCCLRTWSLLFRSAPICCTNLPASKLT 176
HV C+ TW + PIC T++ + T
Sbjct: 166 HVLCIETWLKDHPNCPICRTDVSVKQQT 193
>At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 351
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 93 HVCCLRTWSLLFRSAPICCTNLPASK 170
H CL W L S P+C LPA +
Sbjct: 246 HSDCLLPWLELHSSCPVCRYQLPADE 271
>At1g09740.1 68414.m01093 ethylene-responsive protein, putative
similar to ER6 protein [Lycopersicon esculentum]
GI:5669654; contains Pfam profile PF00582: universal
stress protein family
Length = 171
Score = 26.2 bits (55), Expect = 4.5
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = +2
Query: 77 IRESQARMLPTDLEPALSFCTH--LLYKSAGIQADT-YKMVSLNENLDIDRAHANYRAIT 247
I + Q R+ T LE A C + K+ + D YK+ ENL D RA
Sbjct: 79 IEQHQKRITDTILEHASQICAEKSVNVKTQVVIGDPKYKICEAVENLHADLLVMGSRAYG 138
Query: 248 NLKRQF 265
+KR F
Sbjct: 139 RIKRMF 144
>At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 310
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3
Query: 93 HVCCLRTWSLLFRSAPICCTNLPASKLTHIKW 188
H CL+ W S PIC LP + W
Sbjct: 253 HPPCLKPWLDEHNSCPICRHELPTDDQKYENW 284
>At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 472
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 93 HVCCLRTWSLLFRSAPICCTNLPASKLTH 179
H+ C+ TW L + P+C ++L + +H
Sbjct: 158 HMDCIDTWLLSHSTCPLCRSSLLSDLSSH 186
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 108 RTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTLIG 221
RTW+ +F + CC I FH+ RIW+ +G
Sbjct: 97 RTWTYIFGA---CCATT-----VFIPSFHNYRIWSFLG 126
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 108 RTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTLIG 221
RTW+ +F + CC I FH+ RIW+ +G
Sbjct: 177 RTWTYIFGA---CCATT-----VFIPSFHNYRIWSFLG 206
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 8 ATNHPASPSSQSKVLCYYDSKS 73
A + PA+ SS S++LC Y S S
Sbjct: 2 AISAPAACSSSSRILCSYSSPS 23
>At4g00630.1 68417.m00087 K+ efflux antiporter, putative (KEA2)
Monovalent cation:proton antiporter family 2 (CPA2
family) member, PMID:11500563; similar to
SWISS-PROT:SPP03819 Glutathione-regulated
potassium-efflux system protein kefC (K(+)/H(+)
antiporter) [Escherichia coli]
Length = 627
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 212 IDRAHANYRAITNLKRQFPQLRVFL 286
+D ANYR + L + FP ++ F+
Sbjct: 500 LDTPGANYRCVWALSKYFPNVKTFV 524
>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 492
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 45 KSSATMTARAISENLKHVCCLRTWSLLFRSAPIC 146
+ T + I +L HV CLR+W ++ P C
Sbjct: 296 REEMTNAKKLICGHLFHVHCLRSWLERQQTCPTC 329
>At2g38120.1 68415.m04679 amino acid permease, putative (AUX1)
identical to AUX1 GI:1531758 from [Arabidopsis thaliana]
Length = 485
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 108 RTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTLIG 221
RTW+ +F + CC I FH+ RIW+ +G
Sbjct: 171 RTWTYIFGA---CCATT-----VFIPSFHNYRIWSFLG 200
>At2g21050.1 68415.m02499 amino acid permease, putative similar to
AUX1 [Arabidopsis thaliana] GI:1531758; contains Pfam
profile PF01490: Transmembrane amino acid transporter
protein
Length = 483
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 108 RTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTLIG 221
RTW+ +F + CC I FH+ RIW+ +G
Sbjct: 165 RTWTYIFGA---CCATT-----VFIPSFHNYRIWSFLG 194
>At1g77690.1 68414.m09046 amino acid permease, putative similar to
AUX1 (regulator of root gravitropism, putative permease)
GI:1531758 GB:CAA67308 from [Arabidopsis thaliana];
contains Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 470
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 108 RTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTLIG 221
RTW+ +F + CC I FH+ RIW+ +G
Sbjct: 169 RTWTYIFGA---CCATT-----VFIPSFHNYRIWSFLG 198
>At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 281
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 45 KSSATMTARAISENLKHVCCLRTWSLLFRSAPIC-CTNLPASKLT 176
+ T + + +L HV CLR+W + P C +PA T
Sbjct: 117 REEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPAENAT 161
>At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 389
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 45 KSSATMTARAISENLKHVCCLRTWSLLFRSAPIC-CTNLPASKLT 176
+ T + + +L HV CLR+W + P C +PA T
Sbjct: 225 REEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPAENAT 269
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,653,026
Number of Sequences: 28952
Number of extensions: 116419
Number of successful extensions: 399
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -