Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B22
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198...    30   0.77 
12_01_0505 - 4005211-4005234,4005235-4005432,4005522-4006006,400...    27   7.2  
03_02_0762 - 10968888-10969466,10972522-10974175,10974277-109743...    27   7.2  

>04_04_0613 +
           26617677-26617963,26618726-26618786,26619598-26619832,
           26619958-26620196,26620493-26620744,26620844-26621024,
           26621810-26621898,26622200-26622273,26622365-26622443
          Length = 498

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 203 LDLTSQSLISPKGSSIWTMEELDEAIKDPSTNPNYLPAITESYRYLKSTHE 355
           LDLT + +   K  S+  M+E D+ +     +P + P+I E  RYL S  +
Sbjct: 254 LDLTKKGVCVLKNCSMLVMDEADKLL-----SPEFQPSIQELIRYLPSNRQ 299


>12_01_0505 -
           4005211-4005234,4005235-4005432,4005522-4006006,
           4006533-4006700,4007128-4007203,4007327-4007409,
           4007511-4007589,4007685-4007753,4008174-4008266,
           4008668-4008713,4009398-4009522
          Length = 481

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 251 WTMEELDEAIKDPSTNPNYLPAITESYRYLKSTHEHG 361
           WT+    EA   P+ N +Y  + +E ++++++   HG
Sbjct: 367 WTLLAKQEAAFSPTYNRSYKKSSSECFKFIRNWLTHG 403


>03_02_0762 -
           10968888-10969466,10972522-10974175,10974277-10974359,
           10974435-10974533,10974620-10974706,10974782-10974838,
           10974939-10975065,10975344-10975465,10975685-10975732,
           10975867-10976268
          Length = 1085

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 92  YDELEKVLHDKNFDPELKPYLEEAFNAIV 178
           Y+E  K+ HD+N D E   Y +  F  ++
Sbjct: 644 YEETRKIRHDRNGDDEFFHYTDYRFGKVL 672


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,735,280
Number of Sequences: 37544
Number of extensions: 194910
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)