Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B22
(457 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.26
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7) 30 0.79
SB_33903| Best HMM Match : GrpE (HMM E-Value=1.7) 30 0.79
SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07) 30 1.0
SB_44856| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_34351| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_52921| Best HMM Match : BTB (HMM E-Value=0.13) 29 2.4
SB_56018| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_55514| Best HMM Match : RVT_1 (HMM E-Value=0.014) 28 4.2
SB_32062| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68) 27 5.6
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 27 7.4
SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012) 27 9.7
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89) 27 9.7
>SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1111
Score = 31.9 bits (69), Expect = 0.26
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 284 DPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 418
D S NP +P E+ Y + HE + E ++ + R DISTW
Sbjct: 44 DESLNP--VPNEEEAAEYEQHLHEENEQEEELLRRFSREQDISTW 86
>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2529
Score = 30.7 bits (66), Expect = 0.60
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 284 DPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 418
D S +P +P E+ Y + HE + E ++ + R DISTW
Sbjct: 2404 DESLDP--VPNEEEAAEYKQQLHEENEQEEELLRRFSREQDISTW 2446
>SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7)
Length = 420
Score = 30.3 bits (65), Expect = 0.79
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 284 DPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 418
D S +P +P E+ Y + HE + E ++ + R DISTW
Sbjct: 234 DESLDP--VPNEEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 276
>SB_33903| Best HMM Match : GrpE (HMM E-Value=1.7)
Length = 227
Score = 30.3 bits (65), Expect = 0.79
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 284 DPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 418
D S +P +P E+ Y + HE + E ++ + R DISTW
Sbjct: 41 DESLDP--VPNEEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 83
>SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07)
Length = 424
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 284 DPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 418
D S +P +P E+ Y + HE + E ++ + R DISTW
Sbjct: 41 DESLDP--VPNGEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 83
>SB_44856| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 284 DPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 418
D S +P +P E+ Y + HE + E ++ + R DISTW
Sbjct: 9 DESLDP--VPNGEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 51
>SB_34351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.5 bits (63), Expect = 1.4
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +2
Query: 149 YLEEAFNAIVYSMFTNKNLDL--TSQSLISPKGSSIWTMEELDEAIKDPSTNPNYLPAIT 322
Y E F AI Y+ T++ + TSQ++ +P+ S E + I P T+ T
Sbjct: 22 YTTETFQAI-YTPETSQAIYTPETSQAIYTPETSQAIYTPETSQTIHTPETSQAIHTPET 80
Query: 323 ESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLADLNEAIANP 454
Y T + + PE S +Y + +T + ++AI P
Sbjct: 81 FQAIYTPKTSQTIHTPETSQAIYTPETSQAIYT-PETSQAIYTP 123
>SB_52921| Best HMM Match : BTB (HMM E-Value=0.13)
Length = 129
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 80 KTWTYDEL-EKVLHDKNFDPELKPYLEEAFNAIVYSMFTNKNLDLTSQSLIS 232
KT D + KVL+D F+ +KP EA N+++ M+T +LDL + L S
Sbjct: 80 KTKARDTIGSKVLYDITFEESIKP---EAMNSVLAWMYTG-HLDLKCKDLQS 127
>SB_56018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 27.9 bits (59), Expect = 4.2
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = +2
Query: 92 YDELEKVLHDKNFDPELKPYLEEAFNAIVYSMFTNKNL-DLTSQSLISPKGSSIWTMEEL 268
YDE H+ N PE++P E +N +V N ++ L++ SL P S L
Sbjct: 91 YDERTLTRHNDNASPEVEP---EDYNTLVCRQDDNDSVSSLSTASLQDPGSPSRPMGNNL 147
Query: 269 DEAIKDPSTNPNYLPAITESYRYLKSTHEHGNKPE 373
+ + P+T P +S + N PE
Sbjct: 148 PDVL--PATQQPQSPQSPQSPQQSPQIRSLQNSPE 180
>SB_55514| Best HMM Match : RVT_1 (HMM E-Value=0.014)
Length = 684
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 254 TMEELDEAIKDPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMD 406
T+EELD +K T N PA T LK+T ++G + VY D
Sbjct: 453 TLEELDPIVKSKLTEHNLDPATT----LLKTTVKNGADGMGDVSVYKETGD 499
>SB_32062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 275 AIKDPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLADLNE 439
A++DPS NP+ L + + + ++ H P + I + A+ S + L+E
Sbjct: 10 AMQDPSQNPHELKKSKDKEKAYRRSYTHAKPPYSYISLITMAIQQSPNKMLTLSE 64
>SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)
Length = 317
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 68 GSTVKTWTYDELEKV-LHDKNFD-PELKPYLEEAFNAIVYSM 187
G VKTW+ D+L+ V K+FD +LK +++ F ++ ++
Sbjct: 147 GDDVKTWSVDQLKSVGKFLKDFDVKDLKQLVDQQFKTLLSTL 188
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -1
Query: 175 DCVECLL*VWFQFRIKV-FVVKH 110
DC+ C W +FR KV F+V+H
Sbjct: 1924 DCLPCTAHWWLRFRAKVRFIVEH 1946
>SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)
Length = 1551
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 173 IVYSMFTNK-NLDLTSQSLISPKGSSIWTMEELDEAIKDPSTNPNYLPAITES 328
+ YS ++ +D ++S + KG+ + E ++DP + PA+ E+
Sbjct: 108 LTYSYHSSSWTVDFRAESFVGDKGAKEMVVYESKTKVQDPPVGEHGCPAVVEA 160
>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3307
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 95 DELEKVLHDKNFDPELKPYLEEAFNAIVYSMFTNKNLDLT 214
DEL ++L + ++P+L++ F I FT+ LD+T
Sbjct: 163 DELLEILSETKDPTRVQPHLKKCFEGIASLQFTD-TLDIT 201
>SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)
Length = 1328
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 95 DELEKVLHDKNFDPELKPYLEEAFNAIVYSMFTNKNLDLT 214
DEL ++L + ++P+L++ F I FT+ LD+T
Sbjct: 1002 DELLEILSETKDPTRVQPHLKKCFEGIASLQFTD-TLDIT 1040
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,523,524
Number of Sequences: 59808
Number of extensions: 222783
Number of successful extensions: 532
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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