Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B22
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   4.8  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   8.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.4  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 149 YLEEAFNAIVYSMFTNK 199
           Y   AFN I+YS+F  +
Sbjct: 315 YSNSAFNPIIYSIFNTE 331


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 272 EAIKDPSTNPNYL 310
           EA+KD   +PNY+
Sbjct: 528 EAVKDTXCDPNYV 540


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/41 (19%), Positives = 19/41 (46%)
 Frame = +2

Query: 269 DEAIKDPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVY 391
           D   ++ S  P  + +++ +Y Y    + + N    + K+Y
Sbjct: 69  DRTERERSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKLY 109


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 244  FYMDDGRTGRSYKRSIYKSKLSAC 315
            + +D+  +   Y   +YKS  S+C
Sbjct: 948  YIVDESSSSSFYSSFLYKSSESSC 971


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 455 QGSRSLRSSQLMSKLICPLHEHRL 384
           QGS  L S+ L  +L  PLH + L
Sbjct: 343 QGSAGLPSAILAMRLSHPLHGNLL 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,857
Number of Sequences: 438
Number of extensions: 2477
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)