Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B22
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62740.1 68414.m07081 stress-inducible protein, putative simi...    32   0.21 
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    30   0.65 
At2g44140.2 68415.m05491 autophagy 4a (APG4a) identical to autop...    29   1.5  
At2g44140.1 68415.m05490 autophagy 4a (APG4a) identical to autop...    29   1.5  
At4g15340.1 68417.m02346 pentacyclic triterpene synthase (04C11)...    29   2.0  
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR...    28   3.4  
At5g23380.1 68418.m02734 expressed protein                             27   4.5  
At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase fa...    27   4.5  
At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG...    27   6.0  
At5g11100.1 68418.m01296 C2 domain-containing protein similar to...    27   7.9  
At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing pro...    27   7.9  
At3g16880.1 68416.m02158 F-box protein-related contains weak hit...    27   7.9  
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei...    27   7.9  

>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 571

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 19/82 (23%), Positives = 37/82 (45%)
 Frame = +2

Query: 164 FNAIVYSMFTNKNLDLTSQSLISPKGSSIWTMEELDEAIKDPSTNPNYLPAITESYRYLK 343
           FN+ V       NL  T+  L S + ++  ++   DEA+ D        P   + Y  L 
Sbjct: 18  FNSAVNHFTDAINLTPTNHVLFSNRSAAHASLNHYDEALSDAKKTVELKPDWGKGYSRLG 77

Query: 344 STHEHGNKPENSIKVYVRAMDI 409
           + H   N+ + +++ Y + ++I
Sbjct: 78  AAHLGLNQFDEAVEAYSKGLEI 99


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 173 IVYSMFTNKNLD-LTSQSLISPKGSSIWTMEELDEAIKDPSTNPNYL 310
           I+Y+  T ++ + L  QSL+  + + IW   +  +A++DPS  P +L
Sbjct: 92  ILYNTNTVESFNKLDKQSLLKAEANKIWEDIQSGKALEDPSVLPRFL 138


>At2g44140.2 68415.m05491 autophagy 4a (APG4a) identical to
           autophagy 4a [Arabidopsis thaliana]
           gi|19912143|dbj|BAB88383
          Length = 422

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 206 DLTSQSLISPKGSSIWTMEEL--DEAIKDPSTNPNYLPAITESYRYLKSTHEHGNKP 370
           D T   L   KG S WT   L     +   S NP Y+P++  ++ + +S    G KP
Sbjct: 245 DATKSCLEFSKGQSEWTPIILLVPLVLGLDSVNPRYIPSLVATFTFPQSVGILGGKP 301


>At2g44140.1 68415.m05490 autophagy 4a (APG4a) identical to
           autophagy 4a [Arabidopsis thaliana]
           gi|19912143|dbj|BAB88383
          Length = 467

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 206 DLTSQSLISPKGSSIWTMEEL--DEAIKDPSTNPNYLPAITESYRYLKSTHEHGNKP 370
           D T   L   KG S WT   L     +   S NP Y+P++  ++ + +S    G KP
Sbjct: 290 DATKSCLEFSKGQSEWTPIILLVPLVLGLDSVNPRYIPSLVATFTFPQSVGILGGKP 346


>At4g15340.1 68417.m02346 pentacyclic triterpene synthase (04C11)
           identical to pentacyclic triterpene synthase
           [gi:6650208] [PMID:11247608]
          Length = 766

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 18/77 (23%), Positives = 36/77 (46%)
 Frame = +2

Query: 209 LTSQSLISPKGSSIWTMEELDEAIKDPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKV 388
           L  QS  S    ++ ++  L + ++D   +      + + Y YLK +    N P + IK+
Sbjct: 411 LKIQSFGSQLWDTVMSLHFLLDGVED-DVDDEIRSTLVKGYDYLKKSQVTENPPSDHIKM 469

Query: 389 YVRAMDISTWTLADLNE 439
           + R +    WT +D ++
Sbjct: 470 F-RHISKGGWTFSDKDQ 485


>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1188

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
 Frame = +2

Query: 242 SSIWTMEELDEAIKDPSTNPNYL--PAIT---------ESYRYLKSTHEHGNK-PENSIK 385
           SS W ++EL   +K    NP+++  P            +   Y KS  +H N  P N +K
Sbjct: 81  SSAWCLDELVHIMKSHKNNPSHMVFPIFLYVDPSDIRWQQGSYAKSFSKHKNSHPLNKLK 140

Query: 386 VYVRAM----DISTWTLADLNEA 442
            +  A+    +IS W + + NEA
Sbjct: 141 DWREALTKVANISGWDIKNRNEA 163


>At5g23380.1 68418.m02734 expressed protein
          Length = 301

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 71  STVKTWTYDELEKVLHDKNFDPELKPYLEEAFNAIVYSMFTNKNLDLTSQS 223
           S  K W+   +E  L  +NFD ++K Y   + +AI   +FT K     S+S
Sbjct: 59  SACKNWSTVGIEVPLSLENFDSDVKQYYNPSLSAI--QIFTIKPFSDDSRS 107


>At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase
           family protein belongs to Pfam:PF03372:
           Endonuclease/Exonuclease/phosphatase family; contains 4
           WD-40 repeats (PF00400);similar to SP:Q01968 Inositol
           polyphosphate 5-phosphatase OCRL-1 (EC 3.1.3.-)(Lowe's
           oculocerebrorenal syndrome protein) (SP:Q01968) [Homo
           sapiens]
          Length = 1144

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
 Frame = +2

Query: 68  GSTVKTWTYDELEKVLHDKNFDPELKPYLEEAFNAIVYSMFT-NKNLDLTSQS----LIS 232
           G  +K WT D LEK L  K  +  +   L E     + S  T N    ++S      L+ 
Sbjct: 291 GGVIKIWTLDSLEKSLVLKLEEKHMAALLVERSGIDLRSQVTVNGTCSISSSDVKFLLVD 350

Query: 233 PKGSSIWTMEELDEAIKD 286
              + +W ++ L  ++ D
Sbjct: 351 TVKAKVWAVQHLSFSLWD 368


>At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG-N)
           family protein similar to phosphatidylinositolglycan
           class N short form GB:BAA82620 [gi:5631308] [Mus
           musculus]
          Length = 921

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 71  STVKTWTYDELEKVLHDKNFDPELKPYLEE 160
           S +  W++D+ E +L+  + DP+LK  L +
Sbjct: 212 SFLDEWSFDQFEGLLNRSHADPKLKELLHQ 241


>At5g11100.1 68418.m01296 C2 domain-containing protein similar to
           Ca2+-dependent lipid-binding protein (CLB1) GI:2789434
           from [Lycopersicon esculentum]
          Length = 574

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
 Frame = +2

Query: 143 KPYLEE--AFNAIVYSMFTNKNLDLTSQ----SLISPKGSSIWTMEELDEAIKDPSTNP- 301
           KP ++E   F A+ YS+   K LD T +     L S  G S    E + +AI+D  T P 
Sbjct: 192 KPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSITWPV 251

Query: 302 -NYLPAITESYRYLK 343
              +P +   Y  L+
Sbjct: 252 RKIIPILPGDYSDLE 266


>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing
           protein similar to meiotic asynaptic mutant 1
           [Arabidopsis thaliana] GI:7939627, aysnaptic 1 [Brassica
           oleracea var. alboglabra] GI:23506946; contains Pfam
           profile PF02301: HORMA domain
          Length = 1399

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 254 TMEELDEAIKDPSTNPNYLPAITE 325
           TMEEL+E +  PS+ P   P  +E
Sbjct: 492 TMEELEEKLTPPSSEPKSAPPSSE 515


>At3g16880.1 68416.m02158 F-box protein-related contains weak hit to
           Pfam PF00646: F-box domain; contains weak hit to TIGRFAM
           TIGR01640: F-box protein interaction domain
          Length = 365

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 326 SYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLADLN 436
           SY+ L S H + N  +  +   +  +D ++W   D+N
Sbjct: 152 SYKILSSEHNYINIDDERVDYEIYELDSNSWRALDVN 188


>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
            similar to SP|Q05022 rRNA biogenesis protein RRP5
            {Saccharomyces cerevisiae}; contains Pfam profile
            PF00575: S1 RNA binding domain
          Length = 1838

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 335  YLKSTHEHGNKPENSI-KVYVRA 400
            Y    +EHGN PE S+ KV+ RA
Sbjct: 1634 YFNLENEHGNPPEESVKKVFERA 1656


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,934,458
Number of Sequences: 28952
Number of extensions: 168032
Number of successful extensions: 487
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)