Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B21
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha... 27 1.5
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 27 1.5
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 3.6
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy... 25 3.6
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 25 4.7
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 25 4.7
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce... 25 6.2
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 25 6.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 6.2
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 24 8.2
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 24 8.2
>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 1.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 5 VIIGGGTAGSVLAARLSEEKPKAMVLVIEA 94
VI+G G+AG A + +P + +IEA
Sbjct: 80 VIVGAGSAGLTAAYYIGTRRPDLKIAIIEA 109
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 1.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 296 QDWNKIAADGNYGWSHDEVLKYYMKSERSELRKYK 400
+DWNK D + D L++++ ++R + KYK
Sbjct: 100 EDWNKDETDYLFRLCKDYDLRFFVIADRYDNEKYK 134
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -1
Query: 395 IFLALTSLISCNTLKLRRGTIH--SFHRRRFYSNL 297
IF+ +SLI N ++ R ++H F +R+ YS +
Sbjct: 687 IFILASSLILANFIRYDRESVHIPEFQKRKSYSQV 721
>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 3.6
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +2
Query: 8 IIGGGTAGSVLAARL--SEEKPKAMVLVIEAGK--PEMLLSDVPALAHNLQLTDYAWPYT 175
IIGG + +++ ARL SE + + + ++++ G P+++L ++ L + + W T
Sbjct: 32 IIGGAGSFALIGARLWTSEPESQQLGMIVDKGSDFPQVILDELNDLHTGIVYRETPWRKT 91
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 25.0 bits (52), Expect = 4.7
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +2
Query: 326 NYGWSHDEVLKYYMK--SERSEL 388
N W +DEV+ +YM SERS++
Sbjct: 389 NRQWLNDEVINFYMNLISERSKI 411
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 25.0 bits (52), Expect = 4.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 2 YVIIGGGTAGSVLAARLSEEKPKAMVLVIEA 94
Y++IGGG+ G A R + K A V +IEA
Sbjct: 10 YLVIGGGSGGLASARRAA--KHGAKVALIEA 38
>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 24.6 bits (51), Expect = 6.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 290 RPQDWNKIAADGNYGWSHDEVLKYYMKSERSEL 388
R +W K+ D +GW D +++Y K+ + L
Sbjct: 250 RTTEWLKVNVDKIFGWKGD-IVRYSWKTAKDLL 281
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 24.6 bits (51), Expect = 6.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 265 GNTGTSQSLTSRPITPLFITS 203
G+TG S+ + P+ PLF TS
Sbjct: 288 GHTGRLWSVAAHPMLPLFATS 308
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.6 bits (51), Expect = 6.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 204 EVMNNGVIGLEVRLWEVPVLPTSCYTLEAVLKIGIKSPP 320
E ++ G E+ P+LP T+E K+ +KSPP
Sbjct: 695 EDLDESFSGSEISSSPSPLLPDVSDTVEEQQKLLLKSPP 733
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = -1
Query: 212 HHFLNKHPVDAPLYKATHNQLVGGCALRPGHQIKASLVSQP 90
H F N V P + NQ+ C P H K S P
Sbjct: 116 HSFSNPRYVAVPQKSTSPNQVCSYCEPLPNHLTKTKSCSIP 156
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 24.2 bits (50), Expect = 8.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 11 IGGGTAGSVLAARLSEEKPKAMVLVIEAGKPEM 109
+GGG A S+ A SEE A V + G PEM
Sbjct: 454 LGGGAASSMNAGEGSEELDFASV---QRGNPEM 483
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,142
Number of Sequences: 5004
Number of extensions: 38369
Number of successful extensions: 99
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -