Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B21
(416 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 3e-17
SB_2721| Best HMM Match : HI0933_like (HMM E-Value=1.10002e-41) 35 0.023
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.072
SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017) 29 1.5
SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06) 29 1.5
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 2.0
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0) 29 2.0
SB_17803| Best HMM Match : SRCR (HMM E-Value=0) 28 3.6
SB_39155| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27) 28 3.6
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_15349| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34) 27 8.2
SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13) 27 8.2
SB_47011| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-14) 27 8.2
>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 84.6 bits (200), Expect = 3e-17
Identities = 55/140 (39%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Frame = +2
Query: 2 YVIIGGGTAGSVLAARLSEEKPKAMVLVIEAG-KPEMLLSDVPA-LAHNLQLTDYAWPYT 175
YVI G G+AG VLA RLS + P + VL++EAG K +PA L +NL Y W Y
Sbjct: 166 YVICGAGSAGCVLANRLSAD-PDSKVLLLEAGPKDRTWKIHMPAALIYNLCDDKYNWYYH 224
Query: 176 MEHQPGVCLGSDEQRCYWPRGKALGGSSVTNFMLYTRGRPQDWNKIAADGNYGWSHDEVL 355
Q + + + Y PRG+ GGSS N M+Y RG D+++ +G GWS+ + L
Sbjct: 225 TAPQKHM----NNRVMYCPRGRVWGGSSSLNAMVYIRGHAYDYDRWEREGAQGWSYADCL 280
Query: 356 KYYMKSERSELRKYKNAPYR 415
Y+ KS+ EL A +R
Sbjct: 281 PYFRKSQTHELAHPPFASWR 300
>SB_2721| Best HMM Match : HI0933_like (HMM E-Value=1.10002e-41)
Length = 264
Score = 35.1 bits (77), Expect = 0.023
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 5 VIIGGGTAGSVLAARLSEEKPKAMVLVIEAGK 100
+I+GGG AG A ++E PK + ++E GK
Sbjct: 8 IIVGGGAAGFFTAINIAERNPKRKIAILERGK 39
>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 33.5 bits (73), Expect = 0.072
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +2
Query: 2 YVIIGGGTAGSVLAARLSEEKPKAMVLVIEAG 97
++I GGGTAG +LA RL+ + + VL++EAG
Sbjct: 13 FIIAGGGTAGCILANRLTAD-GRHRVLMLEAG 43
>SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)
Length = 280
Score = 29.1 bits (62), Expect = 1.5
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Frame = +2
Query: 5 VIIGGGTAGSVLAARLSEEKPKAMVLVIEA----GKPEMLLS-----DVPALAHNLQLTD 157
VI+GGG GS A ++ P V VIE K LS ++A N+QL+
Sbjct: 106 VIVGGGVMGSSSAFHIASRDPTKRVCVIERDPGYSKCSSTLSVGGIRQQFSMAENIQLSQ 165
Query: 158 YAWPYTME 181
Y++ + E
Sbjct: 166 YSYKFFTE 173
>SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06)
Length = 410
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 5 VIIGGGTAGSVLAARLSEEKPKAMVLVIEAGKPEMLLSD 121
VIIGGG G LA ++ + P V ++ A E L+S+
Sbjct: 192 VIIGGGPVGVELAGEIANDYPSKKVTIVNA--KEQLISN 228
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 200 LGSDEQRCYWPRGKALGGSSVTNFMLYTRGRPQDWNK 310
L + Q+ +W + K GG+ V ++++ + + DWNK
Sbjct: 1347 LENSYQKVHWEKPKDDGGAKVIDYVIEYKPQGIDWNK 1383
>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
Length = 394
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 2 YVIIGGGTAGSVLAARLSEEKPKAMVL 82
YV+IGGG+ G A R +E KA+V+
Sbjct: 53 YVVIGGGSGGIASARRAAEFGVKAVVI 79
>SB_17803| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1428
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +1
Query: 82 CHRGWETRDAFI*CPGLSAQPPTN*LCVALYNGASTG 192
C GW+ D + C L + + C + Y STG
Sbjct: 690 CDEGWDINDGHVVCRSLGYREASFVSCCSKYGSTSTG 726
>SB_39155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 240 RLWEVPVLPTSCYTLEAVLKIGIKSPPMETMDGP 341
RL+ P LP+S + LKIGI+ ++ +GP
Sbjct: 32 RLFSPPTLPSSRMVNKMALKIGIRLRDVQGREGP 65
>SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27)
Length = 440
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 2 YVIIGGGTAGSVLAARLSEEKPKAMVLVI 88
Y+++GGGTA + + P A VL+I
Sbjct: 109 YILVGGGTASFAAYRAIRKADPTAKVLII 137
>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2324
Score = 27.9 bits (59), Expect = 3.6
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Frame = +2
Query: 5 VIIGGGTAGSVLAARLSEEKPKAMVLVIEA----GKPEMLLSDVPALAHNLQLTDYAWPY 172
+IIG G +G + A L+E+ VLV+EA G SD P + + DY P
Sbjct: 2110 IIIGAGVSGLIAANVLTEQDQYIKVLVLEACDHVGGGTYTESD-PKCGVDYEGGDYVKPN 2168
Query: 173 TMEHQPGVC--LGSDEQRCYWPRGKALGGSSVTNFMLYTRGRPQDWNKIAA-DGNYGWSH 343
+ +G D WP G T M + R WN + D N+ W+
Sbjct: 2169 KQRRILNLASDIGLDIAEVAWPE---TGSREST--MRFCRAL-NSWNPLEVWDWNHLWAR 2222
Query: 344 DEV 352
E+
Sbjct: 2223 AEM 2225
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +1
Query: 19 WYSGVCTCSTII*RET-ESDGACHRGWETRDAFI*CPGLSAQPPTN 153
WY C + S CH G+ D + CPG +A P +N
Sbjct: 4230 WYGPECLRQCFYGNKMLPSSCVCHHGYWGTDCSMVCPGGAANPCSN 4275
>SB_15349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 869
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 10 NWWWYSGVCTCSTII*RETESDGACH 87
+W+ + G+ C+ I R+ E+DG H
Sbjct: 558 SWFGHKGMVRCAVYIQRKLENDGILH 583
>SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34)
Length = 354
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 141 LCAKAGTSDKSISGFPASMTSTIAFGFSSDNRAAS 37
+CA+ TSD+ ++G +S TS I SS N+ S
Sbjct: 133 ICAQKKTSDEMVTGIGSSETSRIKKIISSWNKPDS 167
>SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)
Length = 274
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 118 R*KHLWFPSLYDKHHRFR 65
R +HLWFPS+++ FR
Sbjct: 170 RVQHLWFPSIFEMLEHFR 187
>SB_47011| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-14)
Length = 440
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 292 SSRLE*NRRRWKLWMVPRRSFKVLHEIREVRAKKI 396
SS + RR WK W R S + H+ + V K +
Sbjct: 370 SSAINEKRRTWKAWKSGRGSKEEYHKAKRVAKKAV 404
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,439,654
Number of Sequences: 59808
Number of extensions: 307489
Number of successful extensions: 726
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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