Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B20
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0517 + 9054816-9055655 30 0.53
01_05_0197 + 19143582-19143618,19143814-19144523 27 3.8
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 27 5.0
02_05_1001 + 33423562-33424098 27 5.0
01_06_0630 - 30723903-30724496 27 5.0
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262... 26 8.7
11_01_0259 + 1981554-1982249 26 8.7
05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031... 26 8.7
04_04_0236 + 23825368-23825763,23826229-23828667 26 8.7
01_06_1034 + 33962813-33963802 26 8.7
>03_02_0517 + 9054816-9055655
Length = 279
Score = 29.9 bits (64), Expect = 0.53
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 170 ENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTIDR 310
+++ H C+ W L S P+C LPA+ + + IW + R
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRLPR 200
>01_05_0197 + 19143582-19143618,19143814-19144523
Length = 248
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +1
Query: 136 VLCYYDSKSYIRES-------QARMLPTDLEPALSFCTHLLYKSAGIQADTYKM 276
+ +YD KS IR+ + ++ D+E + F HL+ +S G+ D +K+
Sbjct: 132 ITSHYDGKSGIRKHILEMTHMENQLRSMDMEISDGFLVHLIMRSLGLNYDPFKI 185
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Frame = +2
Query: 53 RPWSPSPGYW------R*RLRLPTTQHHLVAKAKSSA 145
R WSPS G W R RLPTT+ H + A
Sbjct: 433 RAWSPSVGDWLADRPRTLRFRLPTTKDHTTERISGLA 469
>02_05_1001 + 33423562-33424098
Length = 178
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 257 WMPADLYSRWVQNERA 210
W PAD+ + WV ERA
Sbjct: 101 WAPADVVAAWVSRERA 116
>01_06_0630 - 30723903-30724496
Length = 197
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 182 HVCCLRTWSLLFRSAPIC 235
HVCCL W S P+C
Sbjct: 146 HVCCLDAWLRRNASCPVC 163
>11_06_0120 -
20324794-20325204,20325416-20325545,20326172-20326255,
20326584-20326823,20327418-20327498,20327761-20328113
Length = 432
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 277 PFYMCQLGCRQICTADGCRTKEQAPSP*AAYVLEI-L*YSSCCH 149
P ++C + CR IC CRTK+ AAY + L Y S H
Sbjct: 265 PDWICPV-CRGICNCSICRTKKGWFPTGAAYRKVVSLGYKSVAH 307
>11_01_0259 + 1981554-1982249
Length = 231
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 182 HVCCLRTWSLLFRSAPICCTNLPA 253
H C+ +W L+ R P+C LPA
Sbjct: 169 HEQCIFSWLLINRHCPLCRFPLPA 192
>05_07_0059 +
27402365-27402733,27402848-27402982,27403070-27403183,
27403297-27403449,27403544-27403644,27403945-27404041,
27404542-27404651,27404775-27404878,27405129-27405308,
27405398-27405741,27405841-27405905,27405981-27406450,
27406939-27407793,27408045-27408116,27408475-27408575,
27409069-27409170,27409295-27409456,27409665-27411230,
27411384-27411602,27413924-27414198,27414291-27414596,
27414727-27415012,27415085-27415087,27415162-27415416,
27415537-27415803
Length = 2236
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 322 LSVRPINGPNSH*VKPFYMCQLGCRQI 242
+S+R + G + K FYMC L R I
Sbjct: 267 MSIREVLGVKNGGTKDFYMCSLSSRTI 293
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 103 NHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPAL 216
NHP +P ++C+ D + RE + T L P +
Sbjct: 276 NHPCNPEMVRFMMCFKDLPDWQREHRPFNAKTRLNPKI 313
>01_06_1034 + 33962813-33963802
Length = 329
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 170 ENLKHVCCLRTWSLLFRSAPICCTNLPAS 256
++L H C+ W + S P+C LP+S
Sbjct: 211 KHLYHAECIIPWLVQHNSCPVCRHPLPSS 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,863,172
Number of Sequences: 37544
Number of extensions: 155622
Number of successful extensions: 398
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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