Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B20
         (337 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              39   9e-04
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.005
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.025
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              34   0.033
SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)                 28   1.6  
SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   1.6  
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)                 28   1.6  
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.6  
SB_52654| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_8304| Best HMM Match : PLAT (HMM E-Value=0)                         27   3.8  
SB_32905| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_52448| Best HMM Match : X (HMM E-Value=1.7)                         26   8.7  
SB_10768| Best HMM Match : Collagen (HMM E-Value=1.5)                  26   8.7  
SB_30955| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 39.1 bits (87), Expect = 9e-04
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +1

Query: 142 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDH 303
           CYY + S  R       P D++P L  CTH+L+  A +   T+K+    EN DH
Sbjct: 25  CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-DH 75



 Score = 33.5 bits (73), Expect = 0.044
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 139 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNEN 294
           +CYY + S  R       P D++P L  CTH+++  + +   T+ M    +N
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN 458


>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 139 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLD 300
           +CY+ + +  R    + LP D++P L  CTH++Y  A I   T K+ +   N D
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWNDD 452


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 34.3 bits (75), Expect = 0.025
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +1

Query: 139 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNEN 294
           +CYY + +  R   A+  P +++P+L  CTH++Y  A + AD  K+     N
Sbjct: 25  VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN 73


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 139 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGI-QADTYKMVSLNEN 294
           +CY+ + S  R+ +A+  P D+ PA   CTHL+Y  A I Q +   M   N++
Sbjct: 22  VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWNDD 72


>SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)
          Length = 778

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 226 THLLYKSAGIQADTYKMVSLNENLDH*SGARL 321
           T +L +  GI+A   K + LN+NLDH S   L
Sbjct: 687 TVVLNQMDGIRAKRRKFICLNDNLDHDSDTHL 718


>SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1213

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 226  THLLYKSAGIQADTYKMVSLNENLDH*SGARL 321
            T +L +  GI+A   K + LN+NLDH S   L
Sbjct: 1086 TVVLNQMDGIRAKRRKFICLNDNLDHDSDTHL 1117


>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
          Length = 769

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 65  PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCCLRTW 205
           P P   R R   PT  H      K + T T R ++  +KHV  +RT+
Sbjct: 316 PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 362


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 65   PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCCLRTW 205
            P P   R R   PT  H      K + T T R ++  +KHV  +RT+
Sbjct: 983  PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 1029


>SB_52654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +2

Query: 119 LVAKAKSSATMTARAISENLKHVCCLRTWSLLF 217
           LVA+ K++   TAR + +  +H+   + W++++
Sbjct: 65  LVARCKNALIQTARTVVKRHRHMIAQQRWTVVY 97


>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1182

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 284 SETILYVSAWMPADLYSRWVQNERAGSKSVGSI 186
           + T++  +AW   D Y  W+Q +  G+  V S+
Sbjct: 398 ASTVIIDTAWCAGDSYDCWLQVDLGGTHCVTSV 430


>SB_32905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 119 LVAKAKSSATMTARAISENLKHVCCLRTWSLLFRSAPICCTNLP 250
           L+ KA  ++T T    S+    V CLR +  L R+ P  C N+P
Sbjct: 110 LMGKAGRASTPTCARRSD----VHCLREYVHLMRTNPDLCVNIP 149


>SB_52448| Best HMM Match : X (HMM E-Value=1.7)
          Length = 549

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +2

Query: 230 ICCTNLPASKLTHIKWFHSMRIW-TIDRA 313
           ICC  LPA +     W  S R W + DRA
Sbjct: 144 ICCCRLPAPRNRKGGWRTSCRAWLSYDRA 172


>SB_10768| Best HMM Match : Collagen (HMM E-Value=1.5)
          Length = 274

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 192 AYGLGACSFVLHPSAVQICR 251
           A+ LG+CSFV+ PS     R
Sbjct: 78  AFSLGSCSFVVEPSKESTAR 97


>SB_30955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 971

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 139  LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNE 291
            + Y+DS S++    A +L    E   +FC   L++  G    TY  +S+ E
Sbjct: 920  IAYFDSHSHMANHGALVLLCATENMRTFC-EALWRYEGFNKPTYGNLSMVE 969


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,826,684
Number of Sequences: 59808
Number of extensions: 173083
Number of successful extensions: 458
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)