Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B20
(337 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa... 30 0.44
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR... 29 0.58
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 1.3
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa... 28 1.3
At4g37110.1 68417.m05256 expressed protein 28 1.8
At4g15075.1 68417.m02316 hypothetical protein 28 1.8
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 27 2.4
At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger) fa... 27 2.4
At5g40070.1 68418.m04861 hypothetical protein contains similarit... 27 3.1
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 27 3.1
At5g57750.1 68418.m07219 zinc finger (C3HC4-type RING finger) fa... 27 4.1
At3g48320.1 68416.m05273 cytochrome P450 71A21, putative (CYP71A... 27 4.1
At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger) fa... 26 5.4
At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger) fa... 26 5.4
At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger) fa... 26 7.2
At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger) fa... 26 7.2
At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containi... 25 9.5
At3g33080.1 68416.m04236 hypothetical protein similar to protein... 25 9.5
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 25 9.5
At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2 [... 25 9.5
At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger) fa... 25 9.5
At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger) fa... 25 9.5
At1g15570.1 68414.m01872 cyclin, putative similar to cyclin A2 [... 25 9.5
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof... 23 9.8
>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 401
Score = 29.9 bits (64), Expect = 0.44
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 113 HHLVAKAKSSATMTARAISEN-LKHVCCLRTWSLLFRSAPICCTNLPASKLT 265
H V K +AR + N + H C+ W + S P+C LPA LT
Sbjct: 200 HCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHELPAEDLT 251
>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1036
Score = 29.5 bits (63), Expect = 0.58
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 218 RSAPICCTNLPASKLTHIKWFHSM 289
RS PIC T P+S +H KW H +
Sbjct: 13 RSCPICATPFPSSSSSH-KWTHQV 35
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 193 PTDLEPALSFCTHLLYKSAG 252
PTD P+LSFC +Y S G
Sbjct: 321 PTDPNPSLSFCPSNIYSSTG 340
>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 423
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 182 HVCCLRTWSLLFRSAPICCTNLPASKLTH 268
HV C+ TW L + P+C +NL + +H
Sbjct: 150 HVECIDTWLLSHSTCPLCRSNLLSGFSSH 178
>At4g37110.1 68417.m05256 expressed protein
Length = 417
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 277 PFYMCQLGCRQICTADGCRTKEQAPSP*AAY-VLEIL*YSSCCH 149
P ++C + CR IC CRTK+ AAY + L Y S H
Sbjct: 228 PDWICPV-CRDICNCSFCRTKKGWLPTGAAYRKIHKLGYKSVAH 270
>At4g15075.1 68417.m02316 hypothetical protein
Length = 168
Score = 27.9 bits (59), Expect = 1.8
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +2
Query: 176 LKHVCCLRTWSLLFRSAP 229
L++ CCL+T ++LF+S P
Sbjct: 126 LRNACCLKTATILFKSTP 143
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 182 HVCCLRTWSLLFRSAPICCTNLPAS 256
HV C+ W L S P+C LP+S
Sbjct: 282 HVRCIVPWLELHSSCPVCRFELPSS 306
>At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 214
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 182 HVCCLRTWSLLFRSAPIC 235
H+CCL W L S P+C
Sbjct: 162 HLCCLDAWLKLNGSCPVC 179
>At5g40070.1 68418.m04861 hypothetical protein contains similarity
to hypothetical proteins of [Arabidopsis thaliana]
Length = 157
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 311 PDQWSKFSLSETILYVSAWMPADLYSRWVQNERAGSKSVG 192
P S +SL+ T L YS WVQN++ K+ G
Sbjct: 8 PSSSSSYSLASTSLSNRLETQEKRYSSWVQNKKKKKKNKG 47
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 62 SPSPGYWR*RLRLPTTQHHLV-AKAKSSATMTARAISENLKHVCCLRTWSLLFRSAPICC 238
SP+ G W + ++P+ H L+ S T+ ARA ++ + LL + C
Sbjct: 578 SPAAGMWFSKFKIPSPGHILIYGPPGSGKTILARAAAKYFE-----EQKDLLAHVILVSC 632
Query: 239 TNLPASKLTHI 271
+ L K+ HI
Sbjct: 633 STLALEKVQHI 643
>At5g57750.1 68418.m07219 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL4 [Arabidopsis thaliana] GI:4928399; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 210
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 182 HVCCLRTWSLLFRSAPICCTNLPASKLT 265
HV C+ TW L + P+C NL LT
Sbjct: 146 HVECIDTWLLTNSTCPLCRDNLLLLGLT 173
>At3g48320.1 68416.m05273 cytochrome P450 71A21, putative (CYP71A21)
identical to Cytochrome P450 71A21 (SP:Q9STL2)
[Arabidopsis thaliana]
Length = 490
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 119 LVAKAKSSATMTARAISENLKHVCCLRTWSLLFRSAPICCTNLPASK 259
LVA SS + A++E L+H CLRT R+ IC NL S+
Sbjct: 290 LVAGTDSSYALMDWAMTELLRHPECLRTLQEEVRT--ICKGNLSVSE 334
>At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 235
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 182 HVCCLRTWSLLFRSAPICCTNLPASKLT 265
HV C+ TW + PIC T++ + T
Sbjct: 166 HVLCIETWLKDHPNCPICRTDVSVKQQT 193
>At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 351
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 182 HVCCLRTWSLLFRSAPICCTNLPASK 259
H CL W L S P+C LPA +
Sbjct: 246 HSDCLLPWLELHSSCPVCRYQLPADE 271
>At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 310
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +2
Query: 182 HVCCLRTWSLLFRSAPICCTNLPASKLTHIKW 277
H CL+ W S PIC LP + W
Sbjct: 253 HPPCLKPWLDEHNSCPICRHELPTDDQKYENW 284
>At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 472
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 182 HVCCLRTWSLLFRSAPICCTNLPASKLTH 268
H+ C+ TW L + P+C ++L + +H
Sbjct: 158 HMDCIDTWLLSHSTCPLCRSSLLSDLSSH 186
>At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containing
protein / ELM2 domain-containing protein / Myb-like
DNA-binding domain-containing protein similar to
BRG1-binding protein ELD/OSA1 [Homo sapiens]
GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT
DNA binding domain, PF01448: ELM2 domain, PF00249:
Myb-like DNA-binding domain
Length = 573
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/39 (20%), Positives = 20/39 (51%)
Frame = +2
Query: 197 RTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTIDRA 313
R W ++ C+ +P+ L ++K+ + M W ++ +
Sbjct: 79 RLWEVVAEKLGFDCSLVPSLILIYLKYLNRMEKWAVEES 117
>At3g33080.1 68416.m04236 hypothetical protein similar to protein
prospero GI:1346808 [Drosophila melanogaster]
Length = 99
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 53 RPWSPSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKH 184
+PWSP+ G W + R HH ++ + + + I++ L H
Sbjct: 41 QPWSPARGRWTIQSR-----HHYISLDRKTKPLKPSLINDILDH 79
>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 492
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 134 KSSATMTARAISENLKHVCCLRTWSLLFRSAPIC 235
+ T + I +L HV CLR+W ++ P C
Sbjct: 296 REEMTNAKKLICGHLFHVHCLRSWLERQQTCPTC 329
>At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2
[Lycopersicon esculentum] GI:5420276; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 461
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 189 HTCLRFSDIALAVIVAEDFALATR*CWVVGSRKRYRQ 79
+T + SD+ +V +D L T+ C + R +YRQ
Sbjct: 404 YTTYKASDLKASVHALQDLQLNTKGCSLNSIRMKYRQ 440
>At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 281
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +2
Query: 134 KSSATMTARAISENLKHVCCLRTWSLLFRSAPIC-CTNLPASKLT 265
+ T + + +L HV CLR+W + P C +PA T
Sbjct: 117 REEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPAENAT 161
>At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 389
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +2
Query: 134 KSSATMTARAISENLKHVCCLRTWSLLFRSAPIC-CTNLPASKLT 265
+ T + + +L HV CLR+W + P C +PA T
Sbjct: 225 REEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPAENAT 269
>At1g15570.1 68414.m01872 cyclin, putative similar to cyclin A2
[Lycopersicon esculentum] GI:5420276, cyclin [Medicago
sativa] GI:1050559; contains Pfam profiles PF00134:
Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
domain
Length = 450
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 189 HTCLRFSDIALAVIVAEDFALATR*CWVVGSRKRYRQ 79
+T + SD+ +V +D L T+ C + R +YRQ
Sbjct: 395 YTTYKASDLKASVHALQDLQLNTKGCPLSAIRMKYRQ 431
>At5g42870.1 68418.m05225 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 930
Score = 22.6 bits (46), Expect(2) = 9.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 109 PASPSSQSKVLCYYDSKSYIRESQARMLPTDLE 207
P+ P SQS C+ SK +RE ++ D E
Sbjct: 486 PSQPLSQSFDPCFNTSKLDLREDESSSGGLDAE 518
Score = 21.0 bits (42), Expect(2) = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 214 LSFCTHLLYKSAGIQADTYKMVSLNENLD 300
LS C HLL S G+ A+ +E LD
Sbjct: 542 LSLCKHLL--SEGMGAEAASQAFNSEKLD 568
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,863,773
Number of Sequences: 28952
Number of extensions: 117715
Number of successful extensions: 353
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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