Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B19
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ... 25 2.1
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 25 3.7
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 3.7
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 24 4.8
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 24 4.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 24 4.8
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 24 6.4
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 24 6.4
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 24 6.4
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 23 8.5
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 23 8.5
>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 25.4 bits (53), Expect = 2.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 48 RVIQGIQALDNLHSKATINITAGGVGHTFVNL 143
+V IQ +DNL K I GG+ TF+ +
Sbjct: 213 KVADKIQLIDNLLDKVNRLIICGGMAFTFLKV 244
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 92 SHNQYHSGRRRSHIRQSSNEKREGERPR 175
S N+ HS +R H R+S R R R
Sbjct: 188 SDNEQHSSDKREHSRRSYRNDRNNWRER 215
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 25 SSIHNSITELSRASKRWTTCIVKPQS 102
+S+HN+ +L A+KR C+++ S
Sbjct: 38 ASVHNNEAQLHSANKRNDNCLIQRSS 63
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 24.2 bits (50), Expect = 4.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 1 LSSRELNISSIHNSITELSRASKR 72
+S NISS+HN ++ LS S++
Sbjct: 38 ISVSAFNISSMHNELSGLSEKSRQ 61
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 24.2 bits (50), Expect = 4.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 1 LSSRELNISSIHNSITELSRASKRWTTCIVKPQSISQREASVTHSSI 141
LS RE++ ++ + + ELS + +V S+ QR S H +
Sbjct: 441 LSPREISNDNLDDHLIELSEPGEIVDNHLVNDTSMHQRRTSGRHDLV 487
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.2 bits (50), Expect = 4.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 4 SSRELNISSIHNSITELSRASKRWTTCIVKPQSISQREASVTHSSI 141
SS + SSI NS T ++ +S ++ + SI +T SSI
Sbjct: 3092 SSTAITSSSIVNSSTPITSSSVLNSSTAITSSSILNSSTPITSSSI 3137
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 23.8 bits (49), Expect = 6.4
Identities = 9/37 (24%), Positives = 17/37 (45%)
Frame = +1
Query: 1 LSSRELNISSIHNSITELSRASKRWTTCIVKPQSISQ 111
L S ++ + N + L+ + +W I KP S+
Sbjct: 922 LKSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSE 958
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 23.8 bits (49), Expect = 6.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 54 IQGIQALDNLHSKATINITAGGVGHTFVNLR 146
I+GI D L A I+ TAGG+G N+R
Sbjct: 228 IEGIY--DTLKMCAMISKTAGGIGINIHNIR 256
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 23.8 bits (49), Expect = 6.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 76 SSAWMPWITLLSSCE*KKYLTLL 8
S+ W PW + S+ + Y TLL
Sbjct: 688 SAIWTPWRVIFSNLPRRIYFTLL 710
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 62 HPSAGQPA**SHNQYHSGRRRSHIRQSSNE 151
+PS+ + A ++ +Y S +S++ SSNE
Sbjct: 48 NPSSNEKASHTNEEYRSKGNQSYVPSSSNE 77
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 23.4 bits (48), Expect = 8.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 42 DNRVIQGIQALDNLHSKATINI 107
D R + IQ+LD H+K INI
Sbjct: 1065 DARTEELIQSLDATHTKPVINI 1086
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,025,864
Number of Sequences: 5004
Number of extensions: 16451
Number of successful extensions: 51
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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