Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B19
(319 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0313 + 2388488-2388560,2389285-2389462,2390221-2390331,239... 28 1.8
07_03_1217 - 24943466-24943828,24944207-24944374,24944941-249450... 27 4.2
01_03_0169 - 13405789-13407504 26 5.6
10_06_0149 + 11264263-11264547,11264664-11264972 26 7.4
07_01_0677 + 5087584-5087589,5088890-5089172,5093561-5093704,509... 26 7.4
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 26 7.4
02_05_1133 + 34346894-34347121,34347222-34347283,34347373-343474... 26 7.4
01_03_0171 - 13419944-13421362 26 7.4
01_01_0183 + 1565166-1565306,1565408-1565503,1567023-1567124,156... 26 7.4
05_01_0071 + 482765-482825,483562-483776,484115-484693 25 9.7
>12_01_0313 +
2388488-2388560,2389285-2389462,2390221-2390331,
2391280-2391362,2391826-2392027,2392078-2392101,
2392234-2392408,2392482-2392683,2393897-2394036
Length = 395
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 9 KRVKYFFYSQLDNRVIQGIQALDNLHSKATINITAGGVGHTFVNLR---MKSERGRGLDY 179
K V Y Y+ L NR+ +G+Q N + + T GG+ FV R ++ + +DY
Sbjct: 228 KAVGYHEYADLINRINKGVQLYSNSMQELSQKGT-GGLSEAFVAFRNYFVEKDVFEEIDY 286
Query: 180 DIG 188
G
Sbjct: 287 KFG 289
>07_03_1217 -
24943466-24943828,24944207-24944374,24944941-24945009,
24945091-24945197,24945846-24945980,24946090-24946195,
24946758-24946794,24949795-24949832
Length = 340
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +2
Query: 56 PGHPSAGQPA**SHNQYHSGRRRSHIR---QSSNEKREGERPRL---*HRH 190
P P+A +P + QYH+ RR IR ++ N+ +G +P L HRH
Sbjct: 180 PVEPAAEEPIFVNAKQYHAILRRRQIRAKLEAQNKLVKGRKPYLHESRHRH 230
>01_03_0169 - 13405789-13407504
Length = 571
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 115 PAVILIVALLCRLSSAWMPWITLL 44
P V++I A+LC + W+ W LL
Sbjct: 454 PYVLVIAAVLCVAALVWLSWPFLL 477
>10_06_0149 + 11264263-11264547,11264664-11264972
Length = 197
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 25 SSIHNSITELSRASKRW-TTCIVKPQSISQREASVTHSSIFE*KAR 159
S+IH S+ SR ++RW TC + + + H +++E + R
Sbjct: 14 SNIHGSMAHASRRARRWRCTCRRSANCKGKSKFVLEHQAMWEKEGR 59
>07_01_0677 +
5087584-5087589,5088890-5089172,5093561-5093704,
5094167-5095269
Length = 511
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 95 HNQYHSGRRRSHIRQ 139
H + HSGRR +HIR+
Sbjct: 482 HRRLHSGRRDTHIRE 496
>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 40 SITELSRASKRWTTCIVKPQSISQREASVTHS 135
S+ ++ +S W TCIV P +E + HS
Sbjct: 1301 SVEDVKDSSSFWNTCIVLPFRSKFKEGTGMHS 1332
>02_05_1133 +
34346894-34347121,34347222-34347283,34347373-34347460,
34348005-34348268,34348346-34348586,34348672-34348748,
34348837-34349007,34349084-34349176,34349257-34349406,
34349491-34349577,34349656-34349820,34349900-34350019,
34350244-34350446,34350547-34350696,34350779-34350926,
34351046-34351129,34351207-34351308
Length = 810
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 54 IQGIQALDNLHSKATINITAGGVGHTFVNLRMKSERGRG 170
I+GI D L ATI+ AGG+G + N+R RG
Sbjct: 228 IEGIY--DTLSECATISKCAGGIGLSIHNIRATGSYIRG 264
>01_03_0171 - 13419944-13421362
Length = 472
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1
Query: 115 PAVILIVALLCRLSSAWMPW 56
P V++I A+LC ++ W+ W
Sbjct: 232 PYVLVIAAVLCVVALVWLAW 251
>01_01_0183 +
1565166-1565306,1565408-1565503,1567023-1567124,
1567478-1567570,1567648-1567715,1567806-1567879,
1567987-1568119,1568426-1568441
Length = 240
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 89 TMQVVQRLDALDNSVIEL*IEEIFN-SLD 6
T +QR+ DNS+IE +++ +N SLD
Sbjct: 105 TAMAIQRVHVWDNSIIETAMKDFYNRSLD 133
>05_01_0071 + 482765-482825,483562-483776,484115-484693
Length = 284
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 167 SPPLAFHSKIDECVTDAS 114
S P FH KI C TD S
Sbjct: 178 SGPKVFHGKISACTTDVS 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,544,968
Number of Sequences: 37544
Number of extensions: 105667
Number of successful extensions: 288
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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