Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B19
         (319 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07)                 30   0.47 
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)         27   2.5  
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_86| Best HMM Match : PGK (HMM E-Value=0)                            27   3.3  
SB_26786| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)                       27   4.4  
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)               27   4.4  
SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_52463| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                       26   7.6  

>SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07)
          Length = 190

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +3

Query: 6   IKRVKYFFYSQLDNRVIQGIQALDNLHSKATINITAGGVGHTFV 137
           I++++     +  + V+Q +  +++L+ K   N+T   +GH FV
Sbjct: 74  IRKIRILSLKKSLSFVVQSLSCIESLNLKGCYNVTDTSIGHAFV 117


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 39  LDNRVIQGIQALDNLHSKATINITAGGVGH 128
           ++NR I  + A DN   + TI+ T G VGH
Sbjct: 233 VENRAIVRLFANDNRQHELTISSTKGAVGH 262


>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
          Length = 1769

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 98   CGFTMQVVQRLDALDNSVIEL*IEEIFNSLDE 3
            CG   + +  L ALD+ +++L +E++   LDE
Sbjct: 1272 CGSAKEKIATLRALDDEILKLLVEDLEKFLDE 1303


>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 95  HNQYHSGRRRSHIRQSSNEKREGERPR 175
           H ++H  ++RSH + SS    E ER +
Sbjct: 394 HKEHHHKKKRSHSKTSSTTDEEKERKK 420


>SB_86| Best HMM Match : PGK (HMM E-Value=0)
          Length = 445

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 48  RVIQGIQALDNLHSKATINITAGGVGHTFVNLRMKSERGRGL 173
           +V   IQ ++NL  K    I  GG+ +TF  +    E G  L
Sbjct: 214 KVADKIQLIENLLDKVNDMIIGGGMAYTFTKVLNNMEIGDSL 255


>SB_26786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 98  NQYHSGRRRSHIRQSSNEKREGER 169
           N+Y+ GRRR  + +  N+ RE  R
Sbjct: 27  NEYNEGRRRRRMERDDNDVRETRR 50


>SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)
          Length = 934

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 16  LNISSIHNSITELSRASKRWTTCIVK-PQSISQREASVTHSSIFE*KA 156
           +N SS  +S  E    S    T I K P S S R   VT S +FE K+
Sbjct: 752 INRSSTEHSSMEQPDGSSNTLTIIQKDPNSQSSRALHVTKSPVFESKS 799


>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
          Length = 1110

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 16  LNISSIHNSITELSRASKRWTTCIVK-PQSISQREASVTHSSIFE*KA 156
           +N SS  +S  E    S    T I K P S S R   VT S +FE K+
Sbjct: 608 INRSSTEHSSMEQPDGSSNTLTIIQKDPNSQSSRALHVTKSPVFESKS 655


>SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 92  SHNQYHSGRRRSHIRQSSNEKREGERPRL*H 184
           S +   SGRRR+     S  +RE  RPR  H
Sbjct: 112 SESGRESGRRRARHDTDSESERESRRPRARH 142


>SB_52463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 37  NSITELSRASKRWTTCIVKP 96
           + +  LS+ SK W  C +KP
Sbjct: 588 DDVASLSKTSKLWVDCFIKP 607


>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 140 IDECVTDASRCDIDCGFTMQ 81
           ID CV +  +CD  CGF+ Q
Sbjct: 294 IDGCVLNNLKCDQRCGFSEQ 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,564,403
Number of Sequences: 59808
Number of extensions: 124232
Number of successful extensions: 404
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)