Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B19
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-9|AAB42230.1|  417|Caenorhabditis elegans Phosphoglycerat...    26   5.1  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    26   5.1  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    26   5.1  
Z73910-1|CAA98134.2|  523|Caenorhabditis elegans Hypothetical pr...    26   6.8  

>U88169-9|AAB42230.1|  417|Caenorhabditis elegans Phosphoglycerate
           kinase protein 1 protein.
          Length = 417

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 48  RVIQGIQALDNLHSKATINITAGGVGHTFVNLRMKSERGRGLDYD 182
           +V   IQ + NL  K    I  GG+ +TF+ +    + G  L YD
Sbjct: 215 KVADKIQLIKNLLDKVNEMIIGGGMAYTFLKVAQGVKIGNSL-YD 258


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 151  FIRRLTNV*PTPPAVILIVALLCRLSSAWMPWITLLSSCE 32
            FIR+ T +   P     ++    +LS  W PW++ + + E
Sbjct: 2459 FIRQATTISLPPNQQACLIDYEVQLSGDWQPWLSKVPTME 2498


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 151  FIRRLTNV*PTPPAVILIVALLCRLSSAWMPWITLLSSCE 32
            FIR+ T +   P     ++    +LS  W PW++ + + E
Sbjct: 2459 FIRQATTISLPPNQQACLIDYEVQLSGDWQPWLSKVPTME 2498


>Z73910-1|CAA98134.2|  523|Caenorhabditis elegans Hypothetical
           protein M117.1 protein.
          Length = 523

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 118 PPAVILIVALLCRLSSAWMPW 56
           P  V+   +LLC + +A+MPW
Sbjct: 155 PRLVLTFASLLCAVVTAFMPW 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,685,945
Number of Sequences: 27780
Number of extensions: 93676
Number of successful extensions: 304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)