Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B17
(422 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0) 107 5e-24
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17) 96 9e-21
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35) 42 3e-04
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.010
SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26) 30 0.69
SB_22569| Best HMM Match : NAF (HMM E-Value=6.2) 29 1.6
SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7) 28 2.8
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42) 28 3.7
SB_15475| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 3.7
SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6) 27 6.4
SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028) 27 8.5
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16) 27 8.5
SB_14777| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 215
Score = 107 bits (256), Expect = 5e-24
Identities = 52/134 (38%), Positives = 79/134 (58%)
Frame = +2
Query: 17 SERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSV 196
S Y ++T FSP G L Q+EYA AV G T+VG++ +N VV+ E K + L + +V
Sbjct: 2 SGSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRTV 61
Query: 197 NKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVANVMQEYT 376
K+ + H+ M ++G+ D R+LV +AR Q + L +P+ + + +A + Q YT
Sbjct: 62 RKICTLDDHVLMAFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYT 121
Query: 377 QSGGVRPFGVSLLI 418
QS G RPFG+S LI
Sbjct: 122 QSNGRRPFGISTLI 135
>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
Length = 308
Score = 96.3 bits (229), Expect = 9e-21
Identities = 49/132 (37%), Positives = 72/132 (54%)
Frame = +2
Query: 23 RYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 202
RY S + FSP G++ Q+EYA AV GT++ I+ +GVV E S LY+ + +
Sbjct: 136 RYDLSASQFSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLYEYGANKR 195
Query: 203 VEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVANVMQEYTQS 382
+ I HIGM +G+ D R +V AR+ A Y +Y PIP LV RV+ + +T
Sbjct: 196 IFHIDTHIGMAIAGLIADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLY 255
Query: 383 GGVRPFGVSLLI 418
+RPFG + +
Sbjct: 256 SAMRPFGCRIYV 267
>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
Length = 224
Score = 41.5 bits (93), Expect = 3e-04
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 1/128 (0%)
Frame = +2
Query: 38 LTTFSPSGKLVQIEYALAAVAAGG-TSVGIKASNGVVIATENKHKSILYDEHSVNKVEMI 214
+T FSP G+L + GG TSVGI+ ++ V+ T+ KV +
Sbjct: 13 ITIFSPEGRLYPSRVCFSGDQPGGLTSVGIRGADSAVVVTQK-------------KVPLP 59
Query: 215 TGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVANVMQEYTQSGGVR 394
D R V +AR A + + IP L +R+A++ Q YTQ+ +R
Sbjct: 60 IPQA---------DSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMR 110
Query: 395 PFGVSLLI 418
P G +++
Sbjct: 111 PLGCGMIL 118
>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 36.3 bits (80), Expect = 0.010
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 254 DYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVANVMQEYTQSGGVRPFG 403
D R V +AR A + + IP L +RVA++ Q YTQ+ +RP G
Sbjct: 27 DSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLG 76
>SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)
Length = 550
Score = 30.3 bits (65), Expect = 0.69
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 237 TPAWALIIVCSSHKPGKWPNSTT 305
TP +I+ + +PGKWPN+TT
Sbjct: 260 TPQGQIILTQETLEPGKWPNNTT 282
>SB_22569| Best HMM Match : NAF (HMM E-Value=6.2)
Length = 307
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 262 SARHTSQENGPTVLPDVPRADTHSAV 339
+++HT+QENG LPD+ +T+ AV
Sbjct: 108 NSKHTAQENGLLNLPDITLRNTNLAV 133
>SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)
Length = 380
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 47 FSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 205
+ +GKLV E+ + A TSV + ++T LY +H VNKV
Sbjct: 210 YGTTGKLVNDEFRVMR-ALNATSVATSLLSNTNVSTPLNGTFFLYRDHLVNKV 261
>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
Length = 1644
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 176 LYDEHSVNKVEMITGHIGM-VYSGMGP 253
L +EHS NKV+M+ G+ G +Y GP
Sbjct: 367 LLEEHSNNKVKMVGGNTGKGIYKKDGP 393
>SB_15475| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 417
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 67 SSNRICFSGCSSRRHFRWHKSVQWCCD 147
+SN SG S R R H S WC D
Sbjct: 41 NSNITASSGSGSAREARLHNSAAWCSD 67
>SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 259 SSARHTSQENGPTVLPDVPRADTHSAVGPASG 354
SS+ +S +GPT +P P + GP SG
Sbjct: 68 SSSTSSSTTHGPTPVPATPSSPPRPTPGPGSG 99
>SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6)
Length = 388
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = -1
Query: 194 HCVHHIRCSCV-YSLLQSQHHW 132
H VHH+ C+C YS H W
Sbjct: 309 HMVHHVWCTCTEYSEHMVHHEW 330
>SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 269 VTQARKMAQQYYLMYHEPIPTAQLVQRVANVMQEYTQSGGVRPFGVS 409
VT+ K AQ+ +M EP+PT V +E + S + FG+S
Sbjct: 266 VTEEEKKAQKSVVM-DEPVPTEPKETGEGQVEEEESLSSALSAFGLS 311
>SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)
Length = 333
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 398 KDERLLIEYILA*RSPLAGPTALWVSARGTSGSTVGP 288
+D+R I+ + + R P LW SG+ +GP
Sbjct: 124 RDDRKEIDELSSTREPFVSSVKLWSDVMQCSGTLIGP 160
>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
Length = 3999
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 68 VQIEYALAAVAAGGTSVGIKASNGVVIATENK 163
+ + ALA GGT G+ AS V I +NK
Sbjct: 3017 LMVRRALATGGNGGTGTGLGASGTVYIQDDNK 3048
>SB_14777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 224 IGMVYSGMGPDYRLLVTQARKMAQQYYLM 310
+G+ Y +G YRLLV + R + QY L+
Sbjct: 93 LGIRYRLLGVQYRLLVVRYRLLGVQYRLL 121
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,674,050
Number of Sequences: 59808
Number of extensions: 286361
Number of successful extensions: 745
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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