Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B16
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0343 + 14812316-14812586,14812749-14812825                       31   0.57 
11_01_0712 - 5844291-5844474,5844722-5844777,5844861-5844959,584...    30   1.7  
06_03_0587 + 22555414-22557231                                         29   2.3  
06_03_1259 - 28800954-28802468                                         29   3.0  
04_04_1372 + 33008740-33009130,33009485-33011544                       29   4.0  
07_03_0383 - 17476271-17479228,17480466-17480750                       27   9.3  
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778...    27   9.3  

>06_02_0343 + 14812316-14812586,14812749-14812825
          Length = 115

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 138 AGDEPLRLYKGNDISPAPTSGDHPILPSIIDDIKLDPNRRY 260
           AG  P   + GN+      S  +P LPSI +D++L+  R Y
Sbjct: 57  AGGTPASDWMGNERGKGVLSMANPFLPSISEDLQLEKRRSY 97


>11_01_0712 -
           5844291-5844474,5844722-5844777,5844861-5844959,
           5845056-5845137,5845626-5845760,5845844-5846011,
           5846127-5846310,5848114-5848189
          Length = 327

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +3

Query: 177 ISPAPTSGDHPILPSIIDDIKLDPNRRYTRSIHSHREKRSLSRNYYTSFPIHL 335
           I PA  +     LPS +D   L+PNRR  R+  S+R+K++  +     F ++L
Sbjct: 36  IKPAARNVSKSALPSGLD--ALNPNRRTLRTASSNRDKKNKDKLDTEIFELYL 86


>06_03_0587 + 22555414-22557231
          Length = 605

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = -3

Query: 262 VYLLLGSSFISSMIEGSIGWSPLVGAGEMSLPLYNLSGSSPAS 134
           V+L    + +S  I G+IG   LV   E+ L   NLSGS PAS
Sbjct: 541 VFLSFSHNRLSGQIPGTIG--NLVQLNELRLDENNLSGSIPAS 581


>06_03_1259 - 28800954-28802468
          Length = 504

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +3

Query: 141 GDEPLRLYKGNDISPAPTSGDHPILPSIIDDIKLDPNRRYTRSIHSHREKRSLSRNYYTS 320
           GD+  RL+  +  S   T     + P++ DDI+ D  R   R  H  R  R+  R Y   
Sbjct: 202 GDDHHRLWTSHAFSHPSTFDTLAVDPALRDDIRADLLRFAARREHYARVGRAWKRGYL-- 259

Query: 321 FPIHLPP 341
             +H PP
Sbjct: 260 --LHGPP 264


>04_04_1372 + 33008740-33009130,33009485-33011544
          Length = 816

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -3

Query: 262 VYLLLGSSFISSMIEGSIGWSPLVGAGEMSLPLYNLSGSSPAS 134
           VYL LG++ ++  + G I W P +    +SLP+  +SG  PA+
Sbjct: 292 VYLNLGNNSLTGSL-GPI-WYPQMNLQAISLPMNRISGHLPAN 332


>07_03_0383 - 17476271-17479228,17480466-17480750
          Length = 1080

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 258  YTRSIHS-HREKRSLSRNYYTSFPIHLPPFYP-RPIILPRD 374
            YT+S  + HR  RSL+R+ Y+S    +P   P   +I+P +
Sbjct: 995  YTKSNSNFHRSARSLARSLYSSQSFVMPSITPSNDVIVPEE 1035


>02_05_0936 -
           32875479-32875573,32875794-32876028,32877752-32877848,
           32878863-32878927,32879506-32879571,32879735-32879842,
           32880169-32880303,32880582-32880647,32881172-32881222,
           32881312-32881386,32881834-32881896,32882694-32882783,
           32882903-32883100,32883189-32883315,32883482-32884100,
           32884228-32884265,32884651-32884718,32885056-32885100,
           32885243-32885302,32885510-32885593,32885677-32885868,
           32887361-32887663
          Length = 959

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +3

Query: 159 LYKGNDISPAPTSGDHPILPSIIDDIKLDPNRRYTRSIHSHREKRSL--SRNYYTSFPIH 332
           +Y+  D       G   +L S +D +  +       ++ S+ +K SL    ++  SFP  
Sbjct: 731 VYECTDAQVEAAKGFLAVLRSYLDSLCSNLRSHTITNVQSNNDKVSLLLRESFIGSFPTR 790

Query: 333 LPPFYPRPIILPR 371
             PF  RP   P+
Sbjct: 791 ERPFMKRPCRYPK 803


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,686,336
Number of Sequences: 37544
Number of extensions: 252003
Number of successful extensions: 567
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)