Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B16
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15660.1 68414.m01880 expressed protein similar to CENPCA pro...    28   4.4  
At1g02730.1 68414.m00226 cellulose synthase family protein simil...    28   4.4  
At4g11390.1 68417.m01837 DC1 domain-containing protein contains ...    28   5.9  
At5g19840.1 68418.m02357 transcription factor jumonji (jmjC) dom...    27   7.8  
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro...    27   7.8  
At2g18245.1 68415.m02127 expressed protein                             27   7.8  

>At1g15660.1 68414.m01880 expressed protein similar to CENPCA
           protein (GI:11863170) {Zea mays}
          Length = 705

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 219 SIIDDIKLDPNRRYTRSIHSHREKRSLSRNYYTSFPIHLPPFYPRPIILPRDPERFP 389
           +I++D+ +D        I + RE+R        SF +HL    P P+    DP ++P
Sbjct: 70  AILEDVDVDVQ---LNPIPNKRERRPGLDRKRKSFSLHLTTSQPPPVAPSFDPSKYP 123


>At1g02730.1 68414.m00226 cellulose synthase family protein similar to
            cellulose synthase catalytic subunit [gi:13925881] from
            Nicotiana alata, cellulose synthase-4 [gi:9622880] from
            Zea mays
          Length = 1181

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = +2

Query: 230  RYKTGPQQKVHSQYS--FASRKKKFIEKLLYF--FPYPFTS 340
            R+ TG  +   S+ +  FA+R+ KF++++ YF    YPFTS
Sbjct: 925  RWATGSVEIFFSRNNAIFATRRMKFLQRVAYFNVGMYPFTS 965


>At4g11390.1 68417.m01837 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 514

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 315 YSNFSINFFFRDANEYCE-CTF 253
           Y  F +N FFRD N+ C  CT+
Sbjct: 157 YLRFHVNGFFRDGNKRCSACTY 178


>At5g19840.1 68418.m02357 transcription factor jumonji (jmjC)
           domain-containing protein low similarity to PASS1 [Homo
           sapiens] GI:21591407; contains Pfam profile PF02373:
           jmjC domain
          Length = 505

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 362 YYWSRIKRR*MDRERSIVISR*TS 291
           YY  RI RR +DRE S+++S+ +S
Sbjct: 296 YYLRRITRRLIDREMSLLVSKPSS 319


>At3g05470.1 68416.m00599 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 884

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 315 TSFPIHLPPFYPRPIILPRDPERFPIYASSK 407
           TSFPI++P   PRP   P  P++  +   +K
Sbjct: 415 TSFPINVPNSQPRPPPPPPPPQQLQVAGINK 445


>At2g18245.1 68415.m02127 expressed protein
          Length = 398

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 192 TSGDHPILPSIIDDIKLDPNRRYTRSIHSHREKRSLSRNYYTSFP 326
           +SGD  ++PS   ++++   ++  R IHS   K S   ++Y +FP
Sbjct: 332 SSGDK-VVPSHSVELRIREQQKIGRKIHSFNFKSSPHVDHYRNFP 375


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,418,250
Number of Sequences: 28952
Number of extensions: 211203
Number of successful extensions: 546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)