Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B15
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771...    34   0.100
02_03_0273 + 17173983-17174339,17174423-17174575,17174638-171747...    32   0.40 
03_05_1110 - 30466886-30467317,30467522-30467603,30467749-30467810     29   2.1  
06_01_0145 + 1092764-1093351                                           29   3.7  
01_06_0920 - 33009183-33009335,33009421-33009741,33010221-330103...    29   3.7  
12_02_0127 + 13961726-13961947,13962050-13962121,13962288-139630...    27   8.7  

>02_05_0512 +
           29675835-29675901,29676681-29676813,29677020-29677164,
           29677586-29678407
          Length = 388

 Score = 33.9 bits (74), Expect = 0.100
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 92  TRCSWNRWSSRVRWCPWCSRIEWC-PRNERRPRVPW 196
           T C+ + W++  R  PW S   WC PR  R PR PW
Sbjct: 144 TDCTSSWWNAD-RSPPWWSPSRWCCPRGSRIPRSPW 178


>02_03_0273 +
           17173983-17174339,17174423-17174575,17174638-17174700,
           17174943-17175026,17175120-17175242,17175466-17175519,
           17175669-17175764,17176163-17176258,17177179-17177324,
           17178503-17178632,17178697-17179272,17179364-17179462,
           17179535-17179687,17179794-17180558,17181384-17181683
          Length = 1064

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +1

Query: 220 RVHKASKEYR-VNEEKSVLLEEMAHLAHQVHH 312
           R+ +  + YR   +EK VLLEE+ HL +Q+H+
Sbjct: 731 RIQEELERYRNFKDEKEVLLEEIQHLKNQLHY 762


>03_05_1110 - 30466886-30467317,30467522-30467603,30467749-30467810
          Length = 191

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 131 WCPWCSRIEWCPRNERR 181
           WC WCS + W PR  RR
Sbjct: 21  WCNWCSSVVW-PRQPRR 36


>06_01_0145 + 1092764-1093351
          Length = 195

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 18  GEPGYKGDKGEPAAVVYGQKGEPGPRGVPG 107
           GEPG  G+ G+P     G +G  G RG  G
Sbjct: 16  GEPGQPGEPGQPGGRGRGGRGGRGGRGGAG 45


>01_06_0920 -
           33009183-33009335,33009421-33009741,33010221-33010343,
           33010476-33010634,33010720-33011086,33011162-33011315,
           33011782-33012874
          Length = 789

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 65  LWSKRRTRTTRCSWNRW 115
           LW +R+TRTT C++  W
Sbjct: 627 LWCRRQTRTTACAYIEW 643


>12_02_0127 +
           13961726-13961947,13962050-13962121,13962288-13963058,
           13963401-13963573,13963973-13964083,13964114-13964460,
           13964627-13964652
          Length = 573

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 86  RTTRCSWNRWSSRVRWCPWCSRIEWCP 166
           +T R     W +R RW P   +  WCP
Sbjct: 410 KTNRYFQLMWVTRKRWAPVYFKSNWCP 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,160,635
Number of Sequences: 37544
Number of extensions: 339493
Number of successful extensions: 1123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)