Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B13
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16640.1 68416.m02127 translationally controlled tumor family...   113   6e-26
At3g05540.1 68416.m00607 translationally controlled tumor family...    93   2e-19
At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase fa...    29   2.1  
At4g13380.1 68417.m02091 heavy-metal-associated domain-containin...    29   2.8  
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    28   5.0  
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot...    28   5.0  
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot...    28   5.0  
At5g53840.1 68418.m06690 F-box family protein (FBL13) contains F...    27   6.5  
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH...    27   6.5  
At1g69740.1 68414.m08025 porphobilinogen synthase, putative / de...    27   6.5  
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c...    27   6.5  
At5g48450.1 68418.m05991 multi-copper oxidase type I family prot...    27   8.7  
At2g15300.1 68415.m01745 leucine-rich repeat transmembrane prote...    27   8.7  
At1g66940.2 68414.m07609 protein kinase-related                        27   8.7  

>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score =  113 bits (273), Expect = 6e-26
 Identities = 68/169 (40%), Positives = 97/169 (57%), Gaps = 3/169 (1%)
 Frame = +1

Query: 64  MIIYKDVITGDEMFSDTYKVKLIDE-VIYEVTGKTVIRTQDDIHIDGFNPSAEEA--DEG 234
           M++Y+D++TGDE+ SD++  K I+  +++EV GK V     D++I G NPSAEE   DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEG 59

Query: 235 TDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMN 414
            D + +  VDIV   RL E   + DKK +  Y+K Y+K L  KL E+  DQ  +FK  + 
Sbjct: 60  VDDSTQKVVDIVDTFRLQEQPTY-DKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIE 115

Query: 415 KVMKDILARFKDLQFFTGESMDCDGMVAMMEYRNINGTDVPFMMFFKHG 561
              K +L R  D QFF GE M  D  +    Y+   G+  P  ++F HG
Sbjct: 116 GATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYK--EGSTNPTFLYFAHG 162


>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 57/169 (33%), Positives = 93/169 (55%), Gaps = 3/169 (1%)
 Frame = +1

Query: 64  MIIYKDVITGDEMFSDTYKVKLIDE-VIYEVTGKTVIRTQDDIHIDGFNPSAEEA--DEG 234
           M++Y+D++TGDE+ SD++  K I+  +++EV GK              NPS EE   DEG
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIENGMLWEVEGK--------------NPSGEEGGEDEG 46

Query: 235 TDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMN 414
            D      VDI+   RL E  +F DKK + +++K Y+K+L  KL+    +  ++FK ++ 
Sbjct: 47  VDDQAVKVVDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIE 102

Query: 415 KVMKDILARFKDLQFFTGESMDCDGMVAMMEYRNINGTDVPFMMFFKHG 561
              K ++++ KD QFF GESM+ +    +  Y     TD P  ++  +G
Sbjct: 103 SATKFLMSKLKDFQFFVGESMEGEEGSLVFAYYREGATD-PTFLYLAYG 150


>At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|P95649 CbbY protein
           {Rhodobacter sphaeroides}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1055

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/85 (21%), Positives = 37/85 (43%)
 Frame = +1

Query: 304 GDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMNKVMKDILARFKDLQFFTGESMDC 483
           G  + +  Y+ D   K  A    + P ++D   T   +  +D+  +   L F+T   ++C
Sbjct: 375 GRVQQFVDYIADLESKQTATTVPEFPSKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINC 434

Query: 484 DGMVAMMEYRNINGTDVPFMMFFKH 558
             ++  +E+      D+PF +   H
Sbjct: 435 MHVLPDLEFLEKKYKDMPFTVVGVH 459


>At4g13380.1 68417.m02091 heavy-metal-associated domain-containing
           protein low similarity to wound-responsive gene KED
           [Nicotiana tabacum] GI:8096269; contains Pfam profile
           PF00403: Heavy-metal-associated domain
          Length = 195

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
 Frame = +1

Query: 184 DIHIDGFNPSAEEADEGTDSNVETGVDI----VLNHRLVETYAFGDKKSYTLYLKDYMKK 351
           +IHI  F     EAD G   +   GV      V N ++V T  F ++K +   L++ M+K
Sbjct: 82  EIHI-AFLSEKYEADIGKVISKFEGVKTCKVDVENKKVVITGDFDEEKLWK-ELEEKMRK 139

Query: 352 LVAKLEEKAPDQVDIFKTNMNKVMKDI 432
            + K+E++  D   I K   N++ + +
Sbjct: 140 RIVKMEKEKKDDEPITKDEENEIDRGV 166


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 91  GDEMFSDTYKVKLIDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEADEGTDSNVETG 258
           G+   S   K +++D V+  +T      T  +   +GF P+AEEAD+G  S +  G
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE-EGFLPTAEEADDGIGSMMMGG 292


>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 579

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
 Frame = +1

Query: 184 DIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAK 363
           D+  D  N    +  + T        DI+L   LVE+    DKK     L    KK    
Sbjct: 104 DLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKKDTYG 163

Query: 364 L------EEKAPDQVDIFKTNMN 414
           +       E+ PD  +I K  M+
Sbjct: 164 VYSDPADPEELPDYYEIIKNPMD 186


>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 579

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
 Frame = +1

Query: 184 DIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAK 363
           D+  D  N    +  + T        DI+L   LVE+    DKK     L    KK    
Sbjct: 104 DLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKKDTYG 163

Query: 364 L------EEKAPDQVDIFKTNMN 414
           +       E+ PD  +I K  M+
Sbjct: 164 VYSDPADPEELPDYYEIIKNPMD 186


>At5g53840.1 68418.m06690 F-box family protein (FBL13) contains
           F-box domain PF:00646
          Length = 444

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 522 IDISVLHHGDHAITVHGFTCEELKILKPSEYVLHYFVHVRLEYINLV 382
           ID+   H   H I +  FTC    ++  S Y     VH++L  + +V
Sbjct: 109 IDLVTRHRIQH-IDISVFTCSGFGVIPLSLYTCDTLVHLKLSRVTMV 154


>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
           protease GI:13183728 from [Medicago sativa]
          Length = 704

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
 Frame = +1

Query: 202 FNPSAEEADEG--TDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMK--KLVAKLE 369
           F PS E  + G  + S +E  + + L  R+ E   FGD+   T    D+M+  ++  ++ 
Sbjct: 546 FAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMV 605

Query: 370 E-----KAPDQVDIFKTNMNKVMKDILARFKDLQFFTGESMDCD 486
           E     K   QV +     N  +   ++  KD    T + +D +
Sbjct: 606 ERFGFSKKIGQVAVGGAGGNPFLGQSMSSQKDYSMATADVVDAE 649


>At1g69740.1 68414.m08025 porphobilinogen synthase, putative /
           delta-aminolevulinic acid dehydratase, putative similar
           to delta-aminolevulinic acid dehydratase (Alad)
           GI:493019 [SP|P43210] from Glycine max, SP|P24493 from
           Spinacia oleracea, SP|P30124 from Pisum sativum
          Length = 430

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 301 FGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMNKVMKDILARFKD 450
           FGDKK+Y +   +Y + L+   E++A +  DI          DI+   +D
Sbjct: 317 FGDKKTYQMNPANYREALIEAREDEA-EGADILLVKPGLPYLDIIRLLRD 365


>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
           chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
           division protein ftsH homolog 1, chloroplast            
           precursor (EC 3.4.24.-) [Arabidopsis thaliana]
          Length = 716

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
 Frame = +1

Query: 202 FNPSAEEADEG--TDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMK--KLVAKLE 369
           F PS E  + G  + S +E  + + L  R+ E   FGD+   T    D+M+  ++  ++ 
Sbjct: 558 FAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMI 617

Query: 370 E-----KAPDQVDIFKTNMNKVMKDILARFKDLQFFTGESMDCD 486
           E     K   QV +     N  M   ++  KD    T + +D +
Sbjct: 618 ERFGFSKKIGQVAVGGPGGNPFMGQQMSSQKDYSMATADIVDAE 661


>At5g48450.1 68418.m05991 multi-copper oxidase type I family protein
           contains Pfam profile: PF00394 Multicopper oxidase; also
           similar to l-ascorbate oxidase and pollen-specific
           protein
          Length = 550

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +1

Query: 16  SRSFGFIILNRLQSIKMIIYKDVITGD-EMFSDTYKVKLIDEVIYEVTGKTVIRTQDDIH 192
           S  +G II+N    I +     +  GD  +F   +  K   ++  +V  K  +R  D I 
Sbjct: 137 SGGYGGIIVNNRAIIPVPFA--LPDGDVTLFISDWYTKSHKKLRKDVESKNGLRPPDGIV 194

Query: 193 IDGFNPSAEEADEGTDSNVETG 258
           I+GF P A         NVE G
Sbjct: 195 INGFGPFASNGSPFGTINVEPG 216


>At2g15300.1 68415.m01745 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 744

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 22  SFGFIILNRLQSIKMIIYKDVITGDEMFSDTYKVKLID-EVIYEV 153
           SFG I+L  L  I   + +D++   E    ++ +KL+D E+  EV
Sbjct: 660 SFGVILLELLTGIVFSVDRDLVRDSETDEKSWFLKLVDGEIRVEV 704


>At1g66940.2 68414.m07609 protein kinase-related
          Length = 309

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 419 TLFMFVLNISTWSGAFSSNFATNFFM*SLRYNV 321
           TLF F++++S +  +FS+N  + FF    RY +
Sbjct: 277 TLFSFMISVSQFLCSFSANCFSFFFAPFYRYRI 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,593,116
Number of Sequences: 28952
Number of extensions: 261901
Number of successful extensions: 819
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)