Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B12
         (576 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.9  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   5.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   5.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   7.5  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +3

Query: 306 AGTSSLWEGFSLIHIVANGKA-HGQDLGAPGSCLRKFSTMPYMFCNLNNVCDFAQREDYS 482
           AG++ L     L+  +A+G + +G     P + L   S+ P  F ++      ++R+   
Sbjct: 49  AGSNLLCASNGLVTTLASGSSLNGLTNNVPSNGLS--SSGP--FSSIGGGISASKRQRTD 104

Query: 483 FWLSTPEPMPMAMTPIP 533
            WLS+P      +TP P
Sbjct: 105 DWLSSPSGNVPPLTPSP 121



 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 61  NFPGIPLSPGRPSRPGKPVS 2
           N P +  SPG PS P   +S
Sbjct: 113 NVPPLTPSPGPPSHPYTVIS 132


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 4   KPVFQVLMAGQDLMECQES 60
           K    V+++G+DLM C ++
Sbjct: 186 KYAIPVILSGRDLMSCAQT 204


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 276 SQTRLIPQCPAGTSSLWEGFSLI 344
           S + + P+CP+G S L E  +L+
Sbjct: 90  SDSLVQPRCPSGESMLSERAALL 112


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 359 WESSWPRFRCPWQLLTQILNNAI 427
           WE    ++ CP  L   IL N I
Sbjct: 720 WERKRRQYLCPVLLRVSILRNII 742


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,938
Number of Sequences: 336
Number of extensions: 2626
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)