Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B12
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    29   0.64 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.64 
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    26   3.4  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    26   4.5  
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    26   4.5  
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    25   7.9  

>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +3

Query: 27  GRPGLNGMPGKFGPNGIPGKKGEIGDIG--PMGSI 125
           G  GLNG PG  GP G PG+    G  G  P G I
Sbjct: 72  GEEGLNGQPG--GPGGGPGEGFPGGGFGFDPFGDI 104


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 12  FPGLDGRPGLNGMPGKFGPNGIPG 83
           FPG    P + G+PG   P G PG
Sbjct: 539 FPGYPAVPAMPGIPGATAPPGAPG 562


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
 Frame = +3

Query: 426 YMFCNLNNVC-----DFAQREDYSFWLS 494
           ++ C+L   C     DF+ R D+SFW+S
Sbjct: 516 FLLCSLVEQCFGVFNDFSHRFDFSFWIS 543


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -2

Query: 524 SHSHGHGFWRR--QPETIVFSLSE 459
           +H H HG + R  +PE  + SLSE
Sbjct: 126 AHLHSHGIYHRDLKPENFLLSLSE 149


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 309 GTSSLWEGFSLIHIVANGKAHG 374
           G+ SL EGFSL+H +A G   G
Sbjct: 128 GSDSL-EGFSLLHSIAGGTGSG 148


>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 315 SSLWEGFSLIHIVANGKAHGQDLGAP 392
           S+L EGFSLI ++  GK      G P
Sbjct: 91  STLMEGFSLIPLILEGKIDDLLYGLP 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,660
Number of Sequences: 5004
Number of extensions: 43271
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)