Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B12
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 39 0.003
06_01_0145 + 1092764-1093351 33 0.12
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 31 0.50
06_01_0178 + 1386981-1387505 31 0.87
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 2.7
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 29 3.5
05_03_0397 + 13488642-13488941,13489711-13489963,13490594-134906... 28 4.6
12_02_0618 - 21262021-21262117,21262429-21262466,21262933-212629... 28 6.1
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 27 8.1
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +3
Query: 18 GLDGRPGLNGMPGKFGPNGIPGKKGEIGDIGPMGSIGIPGARGLQGIQGRVG 173
G GR G G G+ GP G G++G +G G G G +G +GR G
Sbjct: 1047 GFGGRDGPGGFIGREGPGGFGGREGPVGFGGQESPGGFGGRKGPGAFEGREG 1098
>06_01_0145 + 1092764-1093351
Length = 195
Score = 33.5 bits (73), Expect = 0.12
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 15 PGLDGRPGLNGMPGKFGPNGIPGKKGEIGDIGPMG-SIGIPGARGLQGI--QGRVGLKGF 185
PG G+PG G PG G G G+ G G G +G G G RG G QG VG+ +
Sbjct: 15 PGEPGQPGEPGQPGGRGRGGRGGRGGRGGAGGRLGVRHGRRGRRGGGGARGQGCVGVGWY 74
Query: 186 EG 191
G
Sbjct: 75 GG 76
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 12 FPGLDGRPGLNGMPGKFGPNGIPGKKGEIGDIGPMGSIGIPGAR-GLQGIQGRVGLKG 182
FP +D +PG G PG+ G G G+ G G G G+ G G R G +G +G G +G
Sbjct: 9 FP-VDDQPGEPGQPGEPGQPGGRGRGGRGGRGGRGGAGGRLGVRHGRRGRRGGGGARG 65
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 15 PGLDG--RPGLNGMPGKFGPNGIPGKKGEIGDIGP--MGSIGIPGARGLQGIQG 164
PG G R G N G P G P + G + P G+ G+PG+R + G+ G
Sbjct: 463 PGATGLTRNGRNAPGGPLSPGGFPMNRPGTGGMMPGMPGTPGMPGSRKMPGMPG 516
>06_01_0178 + 1386981-1387505
Length = 174
Score = 30.7 bits (66), Expect = 0.87
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = +3
Query: 21 LDGRPGLNGMPGKFGPNGIPGKKGEIGDIGPMGSIGIPGARGLQGIQGRVGLKGFEG 191
+DG PG G G+ G G G+ G G G G G G G G +G G G G
Sbjct: 11 VDGEPGQPGGRGRGGRGGRGGRGGASGGGGGGGGGGGGGGGGGAGGKGGKGGAGGHG 67
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/62 (35%), Positives = 27/62 (43%)
Frame = +3
Query: 9 GFPGLDGRPGLNGMPGKFGPNGIPGKKGEIGDIGPMGSIGIPGARGLQGIQGRVGLKGFE 188
G G+ G P G P P G+PG G P G G+P G +G+ G GL
Sbjct: 1191 GHGGVGGPPTPPGAPAPPMPPGVPG-----GPPPPPGGRGLPAPPGGRGVVGH-GLTRSL 1244
Query: 189 GL 194
GL
Sbjct: 1245 GL 1246
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 28.7 bits (61), Expect = 3.5
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +3
Query: 9 GFPGLDGRPG---LNGMPGKFGPNGIPGKKGEIGDIGPMGSIGIPGARGLQGIQGRVGL 176
GFPG G PG GMPG P G+PG G G M G PG G+ G V +
Sbjct: 531 GFPG--GMPGGGFPGGMPGGGFPGGMPGG----GFPGGMPG-GFPGGAMPGGVPGNVDM 582
>05_03_0397 +
13488642-13488941,13489711-13489963,13490594-13490673,
13491251-13491393,13491512-13491610,13491785-13491974,
13492504-13492902,13492993-13493400
Length = 623
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 3 ETGFPGLDGRPGLNGMPGKFGPNGIPGKKGEIGDI 107
+ G PG PG + G GP+ PG GE GD+
Sbjct: 582 QQGAPGAGPTPGADAAAGSAGPSEKPG--GEEGDV 614
>12_02_0618 -
21262021-21262117,21262429-21262466,21262933-21262986,
21263274-21263438,21263523-21263759,21263857-21263918,
21264543-21264656,21264816-21264942,21266200-21266218,
21266338-21266428,21266932-21267094,21267182-21267330,
21268147-21268287,21268368-21268533,21268568-21268631,
21268729-21269084,21269759-21269977,21270328-21270433,
21270713-21270942
Length = 865
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 441 LNNVCDFAQREDYSFWLSTPEPMPMAMTPIPARDVGTY 554
L+ + FA R D L+ P P+P +T P + G Y
Sbjct: 48 LDRLAGFAPRRDLPVLLAQPRPLPALVTYRPKWEGGEY 85
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = -3
Query: 67 GPNFPGIPLS--PGRPSRPGKPV 5
GP PG PL P P+RPGKP+
Sbjct: 440 GPARPGKPLGRRPPGPARPGKPL 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,474,740
Number of Sequences: 37544
Number of extensions: 297873
Number of successful extensions: 1000
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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