Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B11
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3... 83 2e-17
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 29 0.34
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 28 0.79
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom... 27 1.0
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 26 2.4
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 2.4
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 26 2.4
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 3.2
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 26 3.2
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 25 4.2
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 25 4.2
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 5.6
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 25 5.6
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 25 7.3
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 21 9.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 24 9.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 9.7
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 24 9.7
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch... 24 9.7
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 24 9.7
>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 158
Score = 83.0 bits (196), Expect = 2e-17
Identities = 37/77 (48%), Positives = 54/77 (70%)
Frame = +2
Query: 188 FEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVALGSYGTYVINRQTPNKQIW 367
+ + +TL+ L + FE+++EE K D+ Y++GV+T+ LG GTYVIN+Q P QIW
Sbjct: 47 YHRVADDTLDVLNDTFEDLLEEVGK-KDYDIQYANGVITLMLGEKGTYVINKQPPAHQIW 105
Query: 368 LSSPVSGPKRFDLVLKN 418
LSSPVSGPK ++ LK+
Sbjct: 106 LSSPVSGPKHYEYSLKS 122
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 29.1 bits (62), Expect = 0.34
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 128 PGHRKFSSAPLSIENIDPAVFEEICSETLESLCEYF--EEIVEEASNLKGADVTYSDGV 298
P RK + + I+N+DPA+ + +T + + + V+E N KG + D V
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSV 218
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 27.9 bits (59), Expect = 0.79
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 161 SIENIDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYS-DGVLTVALGSYGTYVI 337
S N++P EE+ + L S C+ F + +E S D + G + G++G I
Sbjct: 349 SFMNVNPDELEELLEKKLNSFCDDFGD--DERSGFDNTDHDNTLVGEEEMVPGNHGGKSI 406
Query: 338 NRQ-TPNKQ 361
N + T NKQ
Sbjct: 407 NEEITKNKQ 415
>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 341
Score = 27.5 bits (58), Expect = 1.0
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 218 SLCEY--FEEIVEEASNLKGADVTYSDGVLTVALGSYGTYVINRQTPNKQI 364
++C Y F++ + S L DV +G ALG TY+ NR T K I
Sbjct: 157 AICAYCAFQKTIPNTSGLVVIDVV--EGTAMEALGFMKTYLSNRPTSFKSI 205
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 26.2 bits (55), Expect = 2.4
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 203 SETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVALGSYGTYVINR 343
S +LE L +YF + +E+++NLK ++ D T+ L T++++R
Sbjct: 830 STSLEPL-KYFYDAIEQSTNLKLKSISQED---TIDLMRNQTFILSR 872
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 2.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 137 RKFSSAPLSIENIDPAVFEEICSETLESLCEYFEE 241
+K SS L ++ +DP++ + CSE + + E +E
Sbjct: 1297 KKTSSVYLFVKYLDPSLLDFFCSEFVPKITELSKE 1331
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 2.4
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = +2
Query: 113 NNRILPGHRKFSSAPLSIENIDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYSD 292
N+ ++PG ++ L P + E C L C + E ++ + A VTYS
Sbjct: 26 NHFVVPGD--YNLRLLDFLEYYPGLSEIGCCNELN--CAFAAEGYARSNGIACAVVTYSV 81
Query: 293 GVLTVALGSYGTYVIN 340
G LT G G Y N
Sbjct: 82 GALTAFDGIGGAYAEN 97
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 3.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 318 EPRATVNTPSL*VTSAPFKFDASSTISSKYSHKDSKVSLQISS 190
E T N ++ +SAP D S T+SS + H ++L +S
Sbjct: 208 ESLETRNPGNISSSSAPLASDQSPTVSSNHIHASGNLALGSNS 250
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 25.8 bits (54), Expect = 3.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 145 KFSMPRQNSIIQFHRWNYTQCDC 77
+F P+ NS I ++W QC C
Sbjct: 286 RFDCPKCNSKIGSYKWQGLQCSC 308
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 4.2
Identities = 17/77 (22%), Positives = 35/77 (45%)
Frame = +2
Query: 14 MSRNIVRTSRWLARRQINCFSAVTLRIIPSVKLNNRILPGHRKFSSAPLSIENIDPAVFE 193
++ +I++T + + + ++ L NRI P KF S P+V
Sbjct: 288 LASSIIQTGDGTQSCDESTYIELACNLVGRCVLCNRI-PKLTKFKDCITSFYR--PSVAT 344
Query: 194 EICSETLESLCEYFEEI 244
IC + LE++ +++E +
Sbjct: 345 NICDQCLEAIIDFYEPV 361
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 167 ENIDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYSDG 295
E ++ + EE + L S E EE EEAS+ + + +SDG
Sbjct: 375 EELEDSEDEEFARQQLLSRKEEEEEEDEEASDFEDSFADFSDG 417
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 299 LTVALGSYGTYVINRQTPNKQIWLSSPVSGPKRFDLVLKNGGHWVYKH 442
L + L S TY +R K + ++ + P+ F + L+ G+ VY H
Sbjct: 3 LEIILDS-ATYSFDRVITGKICFETNAATSPRSFQIQLRIKGYAVYHH 49
>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 117 IEFCRGIENFRALHYLLK 170
+E+C G E FRALH L K
Sbjct: 232 MEYCAGGEFFRALHSLPK 249
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 24.6 bits (51), Expect = 7.3
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = -2
Query: 258 DASSTISSKYSHKDSKVSLQISSNTAGSMFSIDSGALENFLCPGKILLFNFTDGIIRSVT 79
D + T ++ YS S + I + T ++ +++ +EN L G ++L N I T
Sbjct: 506 DGNETSAAYYSALTSDSTPSILALTRQNLPQLENSTIENALKGGYVMLENKEADITLVGT 565
Query: 78 AEKQLICL 55
+ +C+
Sbjct: 566 GSEVSLCI 573
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 21.4 bits (43), Expect(2) = 9.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 273 APFKFDASSTISSKYSHKDSKVSLQISSNTAGS 175
APF DASS+ + + DS+ + N S
Sbjct: 114 APFTEDASSSNYAHHRSADSQTKSALPPNVPAS 146
Score = 21.0 bits (42), Expect(2) = 9.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 189 NTAGSMFSIDSGALENFLCPG 127
NTA ++FS + G E F G
Sbjct: 175 NTADALFSTEDGREEQFNLEG 195
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.2 bits (50), Expect = 9.7
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +2
Query: 176 DPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVALGSYGTYVINRQTPN 355
DPA+ + T+ESL Y E + +E+ L+ A+ S V +V T + N TPN
Sbjct: 2749 DPALLPLL---TVESLRHYLESLYKESQILEIAESLNSGKVNSVMRRLVSTEISN--TPN 2803
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 9.7
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 315 PRATVNTPSL*VTSAPFKFDASSTISSKYSHKDS-KVSLQISSNTAGSMFS 166
P +T +T S +S+ SSTISS S S +L SS ++ S FS
Sbjct: 283 PTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFS 333
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 305 VALGSYGTYVINRQTPNKQIWLSSPVSGP 391
+A YG + ++ TP ++W+ S SGP
Sbjct: 25 LAEAGYG-FEVDPNTPYAELWMGSHPSGP 52
>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -1
Query: 361 LLVWCLSVYNICAIRTKGNSQHPITVS 281
L++W S+YN G + P T+S
Sbjct: 21 LILWGYSLYNTLRFMVPGKATEPFTLS 47
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.2 bits (50), Expect = 9.7
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 286 VSYVSTF*I*CFFHDLFEVFT*RF*SFTANFFKYRRIYVFNR*WSARKFSMPRQNSIIQ- 110
++ +S I C H +V T T F+++ F+ WS+ S+P + ++
Sbjct: 185 IASISLGRIYCGMHGFMDVSTGTILGVTLAIFQWKYADFFHNVWSSSSTSVPILSVVLAL 244
Query: 109 FHRWNYTQ 86
F W + Q
Sbjct: 245 FFIWFHPQ 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,644
Number of Sequences: 5004
Number of extensions: 42446
Number of successful extensions: 137
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -