Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B11
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0941 + 33198528-33198778,33199216-33199288,33199405-331994... 77 7e-15
10_06_0079 + 10429217-10429444,10430058-10430303,10430701-104307... 30 1.0
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 29 1.4
07_03_0846 - 21983581-21986055 28 3.1
04_01_0241 - 3138951-3139511 28 3.1
08_02_0628 + 19459198-19459674,19459751-19459894,19460191-194604... 28 4.2
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594 28 4.2
05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286... 28 4.2
01_06_0137 + 26855468-26856358 27 5.5
11_01_0431 + 3308001-3308124,3308209-3308366,3311285-3311794 27 7.3
06_03_0878 + 25606788-25606926,25607205-25607279,25607362-256074... 27 7.3
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 27 7.3
12_01_0189 + 1397068-1397241,1397713-1397804,1398456-1398546,139... 27 9.6
06_03_1343 - 29463880-29464054,29464460-29464611,29464734-294648... 27 9.6
05_03_0338 + 12652966-12653017,12653813-12653860,12653924-126540... 27 9.6
05_02_0112 + 6739727-6739958,6740048-6740263,6740349-6740774,674... 27 9.6
05_01_0127 - 863755-865182 27 9.6
03_02_0026 - 5086596-5086755,5087035-5087105,5087407-5087466,508... 27 9.6
>01_06_0941 +
33198528-33198778,33199216-33199288,33199405-33199452,
33199554-33199648,33200552-33200702
Length = 205
Score = 77.0 bits (181), Expect = 7e-15
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Frame = +2
Query: 188 FEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVALGSYGTYVINRQTPNKQIW 367
+ ++ ET+ L E EE ++ + G D+ Y + VLT+ LG GTYV+N+Q PN+QIW
Sbjct: 92 YHKLADETIHDLLEKLEEY-GDSLQMDGFDIDYGNQVLTLRLGELGTYVVNKQAPNRQIW 150
Query: 368 LSSPV-------SGPKRFDLVLKNGGHWVYKHNGVTL 457
LSSPV SGP RFD W+Y+ G L
Sbjct: 151 LSSPVRLSTFVRSGPSRFDWDAPT-NCWIYRRTGANL 186
>10_06_0079 +
10429217-10429444,10430058-10430303,10430701-10430746,
10430796-10431000,10432114-10432225
Length = 278
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 167 ENIDPAVFEEICSETLESLCEYFEEIVEEASNLK 268
E +D +F+ I E+L LCE FE+I ++ + L+
Sbjct: 180 EVMDDYLFKSITKESLPHLCELFEKIEQQYATLE 213
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 155 PLSIENIDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGV 298
P + N F + +ES E + EAS G D++Y DGV
Sbjct: 266 PCDLTNSPAQTFYRESFDKMESSLNSLENFLREASEEFGNDISYDDGV 313
>07_03_0846 - 21983581-21986055
Length = 824
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 272 ADVTYSDGVL-TVALGSYGTYVINRQTPNKQIWLSSPVSGPKRFDLVLKNGG 424
+DV SD ++++GS G V+ Q+ N+Q+W ++ V+++GG
Sbjct: 81 SDVPVSDPTTASLSIGSDGNLVLLDQSKNRQLWSTNVSVASNSTVAVIQDGG 132
>04_01_0241 - 3138951-3139511
Length = 186
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 114 IIEFCRGIENFRALHYLLK 170
+I CRG++NF ALH +K
Sbjct: 124 LIGLCRGLDNFEALHKTMK 142
>08_02_0628 +
19459198-19459674,19459751-19459894,19460191-19460431,
19460616-19461116,19461226-19461635
Length = 590
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 236 EEIVEE-ASNLKGADVTYSDGVLTVALGSYGTY--VINRQTPNKQI 364
E++ +E L+G+D + G +L +YGT ++ +T NKQ+
Sbjct: 185 EQLYDELVDGLRGSDPSIGSGSQVASLETYGTLGAIVKSRTGNKQV 230
>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
Length = 622
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 382 HR*TEPNLLVWCLSVYNICAI 320
H T+ NL++WC+SV +CAI
Sbjct: 290 HVTTKVNLVLWCVSVALMCAI 310
>05_01_0366 -
2867953-2868252,2868329-2868469,2868808-2869089,
2869177-2869569,2869796-2869975,2870149-2871510
Length = 885
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 134 HRKFSSAPLSIENIDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGV 298
HRK L I + P F +CS + + FE++ +E + KG +D +
Sbjct: 605 HRKLLDGMLEICGVPPEKFRTVCSSIDKLDKQTFEQVKKELVDEKGISNETADKI 659
>01_06_0137 + 26855468-26856358
Length = 296
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = +3
Query: 24 ISCAPAGGWH-GGKSIV 71
I APAGGWH GG S+V
Sbjct: 95 IYAAPAGGWHIGGDSLV 111
>11_01_0431 + 3308001-3308124,3308209-3308366,3311285-3311794
Length = 263
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 180 GSMFSIDSG--ALENFLCPGKILLFNFTDGIIRSVTAEKQLICLRASHRLV 34
G + +D+G A + FL P + + ++ + V EK+L LR S RL+
Sbjct: 42 GKFYLVDAGYGAKQGFLPPFRAVRYHLKEWENNPVQNEKELFNLRHSSRLI 92
>06_03_0878 +
25606788-25606926,25607205-25607279,25607362-25607426,
25607504-25607606,25607712-25607762,25608271-25608424,
25608781-25608925,25609039-25609144,25609267-25609415
Length = 328
Score = 27.1 bits (57), Expect = 7.3
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Frame = +2
Query: 95 IPSVKLNNRILPGHRKFSSAPLSIENID------PAVFEEICSETLESLCEYFEEI--VE 250
+ +V+LN+ +L KF A + +D P VF+ S+ Y EI E
Sbjct: 155 LANVQLNSSML----KFDEAKACVRELDWKMSWPPPVFKCDSSDPSSKYLWYTSEIEAAE 210
Query: 251 EASNLKGADVTYSD 292
+A+ L ADV YSD
Sbjct: 211 KATTLFAADVIYSD 224
>03_05_0640 - 26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 197 ICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVALGSYGTY 331
+ S+ LES+ EY E +++ A Y+D V+ A + G Y
Sbjct: 961 VASQLLESMVEYPTPTRAEVADVSEAVRQYADAVMLSAESAIGAY 1005
>12_01_0189 +
1397068-1397241,1397713-1397804,1398456-1398546,
1398931-1399052,1399142-1399289,1399596-1399665,
1400465-1400517,1400678-1400822,1401308-1401426,
1401480-1401527,1401528-1401599,1401902-1402024,
1402025-1402131,1402437-1402547,1402585-1402777,
1402959-1403129,1403548-1403673
Length = 654
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 209 FHCKFLQIPQDLCFQ*IVERSKIFYAPAKF 120
FHC F+++ D+ FQ + +F KF
Sbjct: 340 FHCAFIKMHSDIFFQVYTSAANLFIMKNKF 369
>06_03_1343 -
29463880-29464054,29464460-29464611,29464734-29464889,
29465010-29465316,29465411-29465527,29465600-29465934
Length = 413
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -2
Query: 423 PPFLSTKSKRFGPDTGELSQICLFGVCLFI-TYVP*EPRATVNTP-SL*VTSAPFKF 259
P +L++ ++G +T L ICL G C + Y+ + + P SL +T+ + F
Sbjct: 217 PQWLTSAMLQYGLETWNLGVICLIGNCFLMGAYLVIQAPVLIKYPASLSLTAYSYSF 273
>05_03_0338 +
12652966-12653017,12653813-12653860,12653924-12654080,
12654104-12654206,12654866-12655111,12655802-12656204,
12656257-12656354,12656460-12657044,12657120-12657566
Length = 712
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 392 KRFDLVLKNGGHWVYKHNGVTL 457
K +D++L G +W+Y+H+ +TL
Sbjct: 564 KGYDIIL--GANWIYQHSPITL 583
>05_02_0112 +
6739727-6739958,6740048-6740263,6740349-6740774,
6740992-6741080,6741259-6741387,6741788-6742018
Length = 440
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 318 EPRATVNTPSL*VTSAPFKFDASSTISSKYSH 223
+P A V+ + +T AP++F A++ I Y+H
Sbjct: 396 DPDAHVSWDGIHLTEAPYRFIANTWIRGPYAH 427
>05_01_0127 - 863755-865182
Length = 475
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 67 IDLPPCQPPAGAHDIP 20
+ LPPCQP A AH P
Sbjct: 150 VALPPCQPAAKAHPDP 165
>03_02_0026 -
5086596-5086755,5087035-5087105,5087407-5087466,
5087625-5087684,5088012-5088054,5088130-5088221,
5088304-5088372,5088458-5088502,5089209-5089317,
5089579-5089679,5089769-5089861,5089936-5089996,
5090084-5090187,5091592-5091972
Length = 482
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 206 HCKFLQIPQDLCFQ*IVERSKIFYAPAKFYYSISQME 96
H + L + +C+ I++ + F A YY ISQ+E
Sbjct: 204 HQELLNLQYKVCYARILDLKRRFLEAALRYYDISQIE 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,895,187
Number of Sequences: 37544
Number of extensions: 260203
Number of successful extensions: 731
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -