Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B11
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42025| Best HMM Match : HTH_AraC (HMM E-Value=0.038)                35   0.037
SB_831| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.61 
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_48245| Best HMM Match : efhand (HMM E-Value=0.086)                  29   2.4  
SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.3  
SB_57109| Best HMM Match : DUF1280 (HMM E-Value=7.4)                   27   5.6  
SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_37154| Best HMM Match : WD40 (HMM E-Value=7.00649e-45)              27   5.6  
SB_37881| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_908| Best HMM Match : DUF1682 (HMM E-Value=3.1e-38)                 27   7.5  
SB_36258| Best HMM Match : LRR_1 (HMM E-Value=0.00026)                 27   9.9  
SB_15589| Best HMM Match : Pentapeptide (HMM E-Value=1.7)              27   9.9  
SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_42025| Best HMM Match : HTH_AraC (HMM E-Value=0.038)
          Length = 318

 Score = 34.7 bits (76), Expect = 0.037
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +2

Query: 218 SLCEYFEEIVEEASNLKGADVTY--SDGVLTVALGSYGTYVINRQTPNKQIWLSS 376
           ++ E+FE+ VE+  +    D+    S GVLTV   +    + +RQ P +Q+WL++
Sbjct: 261 AVAEFFEQAVEDIFDDSDLDLDLENSAGVLTVRFENGTQLIFSRQEPLRQLWLAA 315


>SB_831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 211 FRIFM*ILRRDRGRSIKFKRC*RNLQ*WGVDCCPWFLWHICYKQTDTKQADLAQFT 378
           F + + ++R    RS++F  C R +   G   C  F+W      TDTK  DL  F+
Sbjct: 313 FAVILLVIRLVAFRSVQFLNCSRGMIVGG--SCLSFIWRHGEDTTDTKCTDLGNFS 366


>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 270 PFKFDASSTISSKYSHKDSKVSLQISSNTAGS 175
           PF+ D + T +SK +H+D    + + S+++GS
Sbjct: 604 PFQADGTDTTNSKLTHRDELSYIPLKSSSSGS 635


>SB_48245| Best HMM Match : efhand (HMM E-Value=0.086)
          Length = 285

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 293 GVLTVALGSYGTYVINRQTPNKQIWLSSPVSG 388
           G L V+LG YGT   N   PN    ++S V G
Sbjct: 202 GTLNVSLGGYGTTTTNMGMPNGPGIMASSVQG 233


>SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 228 SHKDSKVSLQISSNTAGSMFSIDSGALENFLCPGKILLFNFT-DGIIRS 85
           S K++  S+  S     S FS+     E F+C G  LL  FT DG+I +
Sbjct: 53  SDKEAGTSVDSSKRGYKSTFSVSPLRDELFVCSGNGLLQRFTWDGLIEA 101


>SB_57109| Best HMM Match : DUF1280 (HMM E-Value=7.4)
          Length = 605

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 182 AVFEEICSETLESLCEYFEEIVEEASNL 265
           A++ E+   T+ S C+  +E VEE SN+
Sbjct: 446 ALYPEVVLSTISSKCKSIDEKVEELSNM 473


>SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 939

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 119 RILPGHRKFSSAPLSIENIDPAVFEEICSETLESLCEYFEEIVEEASNLKGAD 277
           + L GH K + +P+    +   VF+ +  + +ES+CEY   +   A   K +D
Sbjct: 443 KTLKGHTKPNKSPI----VARYVFDNLYRKQVESVCEYVATLKHLAGECKFSD 491


>SB_37154| Best HMM Match : WD40 (HMM E-Value=7.00649e-45)
          Length = 870

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 182 AVFEEICSETLESLCEYFEEIVEEASNL 265
           A++ E+   T+ S C+  +E VEE SN+
Sbjct: 446 ALYPEVVLSTISSKCKSIDEKVEELSNM 473


>SB_37881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -2

Query: 267 FKFDASST----ISSKYSHKDSKVSLQISSNTAGSMFSIDSGALENFLCPGKILLFNFTD 100
           F+ D+S T       K+  K  +  L  SS+    +    SGAL   LC G+ L  ++ D
Sbjct: 49  FRVDSSKTRDAGFQEKWYSKPLEKLLNKSSSEHIEISGDHSGALYLSLCVGRFLFISYDD 108

Query: 99  GII 91
           G +
Sbjct: 109 GTL 111


>SB_908| Best HMM Match : DUF1682 (HMM E-Value=3.1e-38)
          Length = 326

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 228 SHKDSKVSLQISSNTAGSMFSIDSGALENFLCPGKILLFNFT 103
           +H+D   SL  S    G     +  A    L P K+L+FNFT
Sbjct: 145 NHEDMFESLLFSDQYVGPKQEDEDQAAAKPLKPKKVLIFNFT 186


>SB_36258| Best HMM Match : LRR_1 (HMM E-Value=0.00026)
          Length = 522

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 47  LARRQINCFSAVTLRIIPSVKLNNRILPGHRKFSSAPLSIENIDP---AVFEEICSETLE 217
           L R  IN    + ++ I +V ++N  L          LS+E I P   AVFE  C  +LE
Sbjct: 309 LRRLVINGCDELPIKWISAVFISNPNLSSIGLCFIRHLSLEKIIPDQNAVFENSCPSSLE 368

Query: 218 SL 223
           SL
Sbjct: 369 SL 370


>SB_15589| Best HMM Match : Pentapeptide (HMM E-Value=1.7)
          Length = 502

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 LKGADVTYSDGVLTVALGSYGTYVINRQTPN 355
           LK   + ++DGV  V++G Y  ++I+R+T N
Sbjct: 92  LKEFTIMFNDGV--VSMGEYMAFMISRETEN 120


>SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 378 GELSQICLFGVCLFITYVP*EPRAT 304
           GEL+++C    C F+ YV   PR T
Sbjct: 449 GELTKVCTLRSCSFLYYVLRRPRYT 473


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,117,263
Number of Sequences: 59808
Number of extensions: 311978
Number of successful extensions: 778
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)