Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B11
(460 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC048097-1|AAH48097.1| 210|Homo sapiens frataxin protein. 115 9e-26
BC023633-1|AAH23633.1| 210|Homo sapiens frataxin protein. 115 9e-26
AL162730-2|CAH71829.1| 210|Homo sapiens frataxin protein. 115 9e-26
U43752-1|AAA98508.1| 210|Homo sapiens frataxin protein. 113 3e-25
U43747-1|AAA98510.1| 210|Homo sapiens frataxin protein. 113 3e-25
U43753-1|AAA98509.1| 171|Homo sapiens frataxin protein. 84 3e-16
U93173-1|AAD00734.1| 49|Homo sapiens frataxin protein. 35 0.15
Y13751-1|CAA74077.1| 40|Homo sapiens frataxin protein. 34 0.20
AF028240-1|AAB84047.1| 40|Homo sapiens frataxin protein. 34 0.20
U53347-1|AAC50629.1| 541|Homo sapiens neutral amino acid transp... 29 7.7
>BC048097-1|AAH48097.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 115 bits (276), Expect = 9e-26
Identities = 53/98 (54%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Frame = +2
Query: 170 NIDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVALGS-YGTYVINRQ 346
++D +E + ETL+SL E+FE++ ++ + DV++ GVLTV LG GTYVIN+Q
Sbjct: 89 SLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQ 148
Query: 347 TPNKQIWLSSPVSGPKRFDLVLKNGGHWVYKHNGVTLH 460
TPNKQIWLSSP SGPKR+D KN WVY H+GV+LH
Sbjct: 149 TPNKQIWLSSPSSGPKRYDWTGKN---WVYSHDGVSLH 183
>BC023633-1|AAH23633.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 115 bits (276), Expect = 9e-26
Identities = 53/98 (54%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Frame = +2
Query: 170 NIDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVALGS-YGTYVINRQ 346
++D +E + ETL+SL E+FE++ ++ + DV++ GVLTV LG GTYVIN+Q
Sbjct: 89 SLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQ 148
Query: 347 TPNKQIWLSSPVSGPKRFDLVLKNGGHWVYKHNGVTLH 460
TPNKQIWLSSP SGPKR+D KN WVY H+GV+LH
Sbjct: 149 TPNKQIWLSSPSSGPKRYDWTGKN---WVYSHDGVSLH 183
>AL162730-2|CAH71829.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 115 bits (276), Expect = 9e-26
Identities = 53/98 (54%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Frame = +2
Query: 170 NIDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVALGS-YGTYVINRQ 346
++D +E + ETL+SL E+FE++ ++ + DV++ GVLTV LG GTYVIN+Q
Sbjct: 89 SLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQ 148
Query: 347 TPNKQIWLSSPVSGPKRFDLVLKNGGHWVYKHNGVTLH 460
TPNKQIWLSSP SGPKR+D KN WVY H+GV+LH
Sbjct: 149 TPNKQIWLSSPSSGPKRYDWTGKN---WVYSHDGVSLH 183
>U43752-1|AAA98508.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 113 bits (272), Expect = 3e-25
Identities = 52/98 (53%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Frame = +2
Query: 170 NIDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVALGS-YGTYVINRQ 346
++D +E + ETL+SL E+FE++ ++ + DV++ GVLTV LG GTYVIN+Q
Sbjct: 89 SLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQ 148
Query: 347 TPNKQIWLSSPVSGPKRFDLVLKNGGHWVYKHNGVTLH 460
TPNKQIWLSSP SGPKR+D KN WV+ H+GV+LH
Sbjct: 149 TPNKQIWLSSPSSGPKRYDWTGKN---WVFSHDGVSLH 183
>U43747-1|AAA98510.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 113 bits (272), Expect = 3e-25
Identities = 52/98 (53%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Frame = +2
Query: 170 NIDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVALGS-YGTYVINRQ 346
++D +E + ETL+SL E+FE++ ++ + DV++ GVLTV LG GTYVIN+Q
Sbjct: 89 SLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQ 148
Query: 347 TPNKQIWLSSPVSGPKRFDLVLKNGGHWVYKHNGVTLH 460
TPNKQIWLSSP SGPKR+D KN WV+ H+GV+LH
Sbjct: 149 TPNKQIWLSSPSSGPKRYDWTGKN---WVFSHDGVSLH 183
>U43753-1|AAA98509.1| 171|Homo sapiens frataxin protein.
Length = 171
Score = 83.8 bits (198), Expect = 3e-16
Identities = 37/71 (52%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Frame = +2
Query: 170 NIDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVAL-GSYGTYVINRQ 346
++D +E + ETL+SL E+FE++ ++ + DV++ GVLTV L G GTYVIN+Q
Sbjct: 89 SLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQ 148
Query: 347 TPNKQIWLSSP 379
TPNKQIWLSSP
Sbjct: 149 TPNKQIWLSSP 159
>U93173-1|AAD00734.1| 49|Homo sapiens frataxin protein.
Length = 49
Score = 34.7 bits (76), Expect = 0.15
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +2
Query: 386 GPKRFDLVLKNGGHWVYKHNGVTLH 460
GPKR+D KN WVY H+GV+LH
Sbjct: 1 GPKRYDWTGKN---WVYSHDGVSLH 22
>Y13751-1|CAA74077.1| 40|Homo sapiens frataxin protein.
Length = 40
Score = 34.3 bits (75), Expect = 0.20
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 170 NIDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTY 286
++D +E + ETL+SL E+FE++ ++ + DV++
Sbjct: 1 SLDETTYERLAEETLDSLAEFFEDLADKPYTFEYYDVSF 39
>AF028240-1|AAB84047.1| 40|Homo sapiens frataxin protein.
Length = 40
Score = 34.3 bits (75), Expect = 0.20
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 170 NIDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTY 286
++D +E + ETL+SL E+FE++ ++ + DV++
Sbjct: 1 SLDETTYERLAEETLDSLAEFFEDLADKPYTFEYYDVSF 39
>U53347-1|AAC50629.1| 541|Homo sapiens neutral amino acid
transporter B protein.
Length = 541
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 210 VSLQISSNTAGSMFSIDSGALENFLCPGKILL 115
V+L + + AG ++ GALE F+ PG++LL
Sbjct: 66 VALGLGVSGAGGALALGPGALEAFVFPGELLL 97
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,573,951
Number of Sequences: 237096
Number of extensions: 1484146
Number of successful extensions: 3322
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3311
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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