Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B11
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53332-10|AAK31530.1|  136|Caenorhabditis elegans Frataxin (invo...    94   5e-20
AY048153-1|AAL05950.1|  136|Caenorhabditis elegans frataxin prot...    94   5e-20
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    31   0.30 
AF025468-6|AAB71043.2|  283|Caenorhabditis elegans Hypothetical ...    29   1.2  
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    28   3.8  
Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical p...    28   3.8  
Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U96695-1|AAB57697.1|  491|Caenorhabditis elegans deoxyuridinetri...    27   5.0  
U13072-2|AAK31397.2|  380|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U53332-10|AAK31530.1|  136|Caenorhabditis elegans Frataxin
           (involved in human friedrich'sataxia) homolog protein 1
           protein.
          Length = 136

 Score = 93.9 bits (223), Expect = 5e-20
 Identities = 46/91 (50%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
 Frame = +2

Query: 188 FEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVALG-SYGTYVINRQTPNKQI 364
           +E     TLE L +YF++I +     +  DV+++ GVLTV +  S GTYVIN+Q+PNKQI
Sbjct: 25  YETAADSTLERLSDYFDQIADSFPVSEQFDVSHAMGVLTVNVSKSVGTYVINKQSPNKQI 84

Query: 365 WLSSPVSGPKRFDLVLKNGGHWVYKHNGVTL 457
           WLSSP+SGPKR+D  L+  G W Y H+G  L
Sbjct: 85  WLSSPMSGPKRYD--LEEEGKWTYAHDGEQL 113


>AY048153-1|AAL05950.1|  136|Caenorhabditis elegans frataxin
           protein.
          Length = 136

 Score = 93.9 bits (223), Expect = 5e-20
 Identities = 46/91 (50%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
 Frame = +2

Query: 188 FEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVALG-SYGTYVINRQTPNKQI 364
           +E     TLE L +YF++I +     +  DV+++ GVLTV +  S GTYVIN+Q+PNKQI
Sbjct: 25  YETAADSTLERLSDYFDQIADSFPVSEQFDVSHAMGVLTVNVSKSVGTYVINKQSPNKQI 84

Query: 365 WLSSPVSGPKRFDLVLKNGGHWVYKHNGVTL 457
           WLSSP+SGPKR+D  L+  G W Y H+G  L
Sbjct: 85  WLSSPMSGPKRYD--LEEEGKWTYAHDGEQL 113


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = +2

Query: 185 VFEEICSETL-----ESLCEYFEEIVEEASNLKGADVTYSDGVLTVALGSYGTYVINRQT 349
           +F + C E L     ++LC+ F E V++     G++ +Y     T +  SYG+       
Sbjct: 229 LFRKTCPEKLIYVLDQNLCD-FPESVKDCPEYNGSETSYRAPKTTTSSSSYGSIAEAPVD 287

Query: 350 PNKQIWLSSPVSGPKR 397
           P      S+PV  P R
Sbjct: 288 PTPYAPASAPVYSPPR 303


>AF025468-6|AAB71043.2|  283|Caenorhabditis elegans Hypothetical
           protein T27A1.2 protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 230 YFEEIVEEASNLKGADVTYSDGVLTVALGSYGT 328
           YF + +E    LKG D+  SDG+L   L  Y T
Sbjct: 228 YFYDDLEVVDCLKGRDIERSDGLLATILVEYDT 260


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
            protein F40G12.3 protein.
          Length = 1099

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
 Frame = -2

Query: 432  TQ*PPFLSTKSKRFGPDTGELSQICLFGVCLFITYVP*-EPRATVNTPSL*VTSAPFKFD 256
            TQ P   ++ SK    +T   SQI  FG     + V    PR TVNT     T A     
Sbjct: 920  TQVPNSSASSSK--SSETTRTSQIPAFGTKTANSSVAELSPRTTVNTGESATTKATSPTS 977

Query: 255  ASSTISSKYSHKDSKVSLQISSNTAGSMFSIDSGALENFLCP 130
              +T +      ++ V++ +++NT     S  +    N   P
Sbjct: 978  GGNTTTISVQSANATVAVTLTTNTTTQTTSSTTSFKSNLSTP 1019


>Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical
           protein ZK1251.9 protein.
          Length = 1701

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 167 ENIDPAVFEEICSETLESLCEYF 235
           ENI P++  E+C   LE+LC  F
Sbjct: 612 ENISPSLRTEMCVHALETLCMMF 634


>Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical
           protein ZK1251.9 protein.
          Length = 1701

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 167 ENIDPAVFEEICSETLESLCEYF 235
           ENI P++  E+C   LE+LC  F
Sbjct: 612 ENISPSLRTEMCVHALETLCMMF 634


>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
           protein F45G2.2a protein.
          Length = 1235

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +2

Query: 173 IDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVALGSYGTYVINRQTP 352
           ID  +  + C E +E        + EE    K +D+TY D +LT  LG +  +   +   
Sbjct: 505 IDFGLDLQSCIELIEKPLGIVSMLDEECIVPKASDMTYVDKLLTQHLGKHPNFQKAKPPK 564

Query: 353 NKQ 361
            KQ
Sbjct: 565 GKQ 567


>Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical
           protein K07A1.2 protein.
          Length = 491

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 126 KILLFNFTDGIIRSVTAEK--QLICLRASH 43
           K+LLFNFTD        ++  QLIC +  H
Sbjct: 271 KVLLFNFTDNAFEVKKGDRIAQLICEKIGH 300


>U96695-1|AAB57697.1|  491|Caenorhabditis elegans
           deoxyuridinetriphosphatase protein.
          Length = 491

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 126 KILLFNFTDGIIRSVTAEK--QLICLRASH 43
           K+LLFNFTD        ++  QLIC +  H
Sbjct: 271 KVLLFNFTDNAFEVKKGDRIAQLICEKIGH 300


>U13072-2|AAK31397.2|  380|Caenorhabditis elegans Hypothetical
           protein C07D10.5 protein.
          Length = 380

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 194 EICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVALGSYGTYVIN 340
           E+CS+ LESL E  E+  E+    +GA+    +  L + +G    Y+ N
Sbjct: 30  ELCSQFLESLSEEIEKNGEDVEEDEGANEQPFEDKLNL-IGKIQQYLTN 77


>U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical
           protein C05D11.9 protein.
          Length = 752

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 341 RQTPNKQIWLSSPVSGPKRFDLVLKNG 421
           R T  K IWLS+ V   KRF ++ K G
Sbjct: 98  RSTSTKGIWLSTHVWHAKRFRMIQKWG 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,385,538
Number of Sequences: 27780
Number of extensions: 241754
Number of successful extensions: 757
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)