Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B11
(460 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g03240.1 68417.m00443 frataxin protein-related contains weak ... 89 1e-18
At3g16270.1 68416.m02053 expressed protein gene model 32 0.21
At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative / hi... 29 2.0
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 28 2.6
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 28 2.6
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 28 2.6
At2g47470.1 68415.m05925 thioredoxin family protein similar to p... 28 3.5
At4g28770.1 68417.m04114 expressed protein 27 4.6
At5g02250.1 68418.m00148 ribonuclease II family protein contains... 27 8.1
At1g75900.1 68414.m08816 family II extracellular lipase 3 (EXL3)... 27 8.1
>At4g03240.1 68417.m00443 frataxin protein-related contains weak
similarity to Frataxin, mitochondrial precursor
(Friedreich's ataxia protein) (Fxn) (Swiss-Prot:Q16595)
[Homo sapiens]
Length = 187
Score = 89.0 bits (211), Expect = 1e-18
Identities = 46/112 (41%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Frame = +2
Query: 137 RKFSS-APLSIEN---IDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLT 304
R FSS P S++ + F ++ + T+ L E E+ + + G D+ Y + VLT
Sbjct: 60 RSFSSQGPASVDYSSVLQEEEFHKLANFTINHLLEKIEDYGDNVQ-IDGFDIDYGNEVLT 118
Query: 305 VALGSYGTYVINRQTPNKQIWLSSPVSGPKRFDLVLKNGGHWVYKHNGVTLH 460
+ LGS GTYV+N+QTPN+QIW+SSPVSGP RFD ++ W+Y+ LH
Sbjct: 119 LKLGSLGTYVLNKQTPNRQIWMSSPVSGPSRFDWD-RDANAWIYRRTEAKLH 169
>At3g16270.1 68416.m02053 expressed protein gene model
Length = 690
Score = 31.9 bits (69), Expect = 0.21
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 264 KFDASSTISSKYSHKDSKVSLQISSNTAGSMF-SIDSGALENFLCPGKILLFNFTDGII 91
K +SST+ S S Q N G + S + G ++N + PG ++ FNF G++
Sbjct: 528 KGSSSSTLPQDLFAMPSTTSHQAPENPVGGILGSQNPGFIQNTMLPGGVMPFNFPQGMM 586
>At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative /
histidine--tRNA ligase, putative similar to SP|P12081
Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA
ligase) (HisRS) {Homo sapiens}; contains Pfam profiles
PF00587: tRNA synthetase class II core domain (G, H, P,
S and T), PF03129: Anticodon binding domain
Length = 479
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 134 HRKFSSAPLSIENIDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGV 298
HRK L I + P F ICS + + FE++ +E KG +D +
Sbjct: 197 HRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSSEIADRI 251
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -2
Query: 270 PFKFDASSTISSKYSHKDSKVSLQISSNTAGSMFSIDS 157
P + DA S+ SS SH+ +++ +SS GS+ ++D+
Sbjct: 1693 PPRDDAGSSGSSPESHRSKEMASPVSSQKFGSLSALDT 1730
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -2
Query: 270 PFKFDASSTISSKYSHKDSKVSLQISSNTAGSMFSIDS 157
P + DA S+ SS SH+ +++ +SS GS+ ++D+
Sbjct: 1692 PPRDDAGSSGSSPESHRSKEMASPVSSQKFGSLSALDT 1729
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +2
Query: 227 EYFEEIVEEASNLK----GADVTYSDGVLTVALGSYGTYVINRQTPNKQ 361
E F +I+EE S+ ADV Y + ALG+Y +Y+ +T N++
Sbjct: 57 EQFRQILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKNRE 105
>At2g47470.1 68415.m05925 thioredoxin family protein similar to
protein disulfide isomerase [Dictyostelium discoideum]
GI:2627440; contains Pfam profile: PF00085 Thioredoxin
Length = 361
Score = 27.9 bits (59), Expect = 3.5
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +2
Query: 164 IENIDPAVFEEICSETLESLCEYFEEIVEEASNLKGADVTYSDGVLTVALG--SYGTYVI 337
+E++D A+ +E+ + + + I EEAS LKG+ Y L +A G+
Sbjct: 266 VESLD-ALVKELVAASEDEKKAVLSRIEEEASTLKGSTTRYGKLYLKLAKSYIEKGSDYA 324
Query: 338 NRQTPNKQIWLSSPVSGPKRFDLVLK 415
+++T L +S K +L LK
Sbjct: 325 SKETERLGRVLGKSISPVKADELTLK 350
>At4g28770.1 68417.m04114 expressed protein
Length = 281
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -1
Query: 121 SIIQFHRWNYTQCDCRKTIDLPPCQPPAGAHDIPRHFSFS 2
SII + W Q + +D PP QPPA A +SFS
Sbjct: 27 SIIIYSIWMLDQYNHHVPVDPPPSQPPA-ASSPDSSYSFS 65
>At5g02250.1 68418.m00148 ribonuclease II family protein contains
Pfam profile PF00773: RNB-like protein
Length = 803
Score = 26.6 bits (56), Expect = 8.1
Identities = 34/122 (27%), Positives = 51/122 (41%)
Frame = +2
Query: 47 LARRQINCFSAVTLRIIPSVKLNNRILPGHRKFSSAPLSIENIDPAVFEEICSETLESLC 226
L R +I A LR ++LN ++ R+F + N D CS + SL
Sbjct: 26 LFRHRIQRLRASHLREFSKLRLNFPLIRADRRF------LGNSDAPS----CSTCIHSLV 75
Query: 227 EYFEEIVEEASNLKGADVTYSDGVLTVALGSYGTYVINRQTPNKQIWLSSPVSGPKRFDL 406
E E +E S KG+ + V V L SYG V+ + N+++ + K D
Sbjct: 76 ESVSEELESISRRKGSRMRVRASV-KVKLTSYGE-VLEDKLVNQELEAGLLLEFKKDADR 133
Query: 407 VL 412
VL
Sbjct: 134 VL 135
>At1g75900.1 68414.m08816 family II extracellular lipase 3 (EXL3)
EXL3 (PMID:11431566); similar to anter-specific
proline-rich protein (APG) SP:P40602 [Arabidopsis
thaliana]
Length = 364
Score = 26.6 bits (56), Expect = 8.1
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Frame = +2
Query: 176 DPAVFEEICSETLESLCEYFEEIVEEASNLKG---ADVTYSDGVLTVALGS---YGTYVI 337
DP + + +LE YFEE +E+ N+ G D ++ + + GS TY
Sbjct: 131 DPITPKLVAVISLEDQLSYFEEYIEKVKNIVGEARKDFIVANSLFLLVAGSDDIANTYYT 190
Query: 338 NRQTPNKQIWLSSPVSGPKRFDLVLKNGGHWV 433
R P + + + + V K G+ V
Sbjct: 191 LRARPEYDVDSYTTLMSDSASEFVTKLYGYGV 222
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,525,027
Number of Sequences: 28952
Number of extensions: 215240
Number of successful extensions: 652
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -