Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B09
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   1.7  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.7  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   5.3  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   7.0  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   9.2  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    25   9.2  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   9.2  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.2  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 175  MLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLD 288
            M+ +D EP +S C  LL  +     D + MVS  E  +
Sbjct: 1281 MVESDYEPDVSLCPELLSLAIDFPGDPFVMVSKMEKYE 1318


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 418 PIKDCTSVDLQCRHHLPLSR 359
           P K+C +  L+C +H+P SR
Sbjct: 46  PCKNCKAGKLECTYHMPSSR 65


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 427 QARTAFTNSALLLAEQYGFDGIDLSWQLPK 516
           Q  T F  S+L +A   G+D I L W L K
Sbjct: 531 QGVTEFVPSSLGVALAKGYDEIGLEWSLTK 560


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 204  KSRLQVRRQHTCLRFSDIALAVIVAEDF 121
            K RLQ R  +   +FS + LAV+ A+ F
Sbjct: 1055 KKRLQKRLGYNDTQFSKVKLAVLQAQSF 1082


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 24/84 (28%), Positives = 37/84 (44%)
 Frame = +2

Query: 110 VAKAKSSATMTARAISENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWT 289
           +  AKSS +  +  I  +   V  L+T S L  S+PI  ++L A+  +     HS+    
Sbjct: 530 LTNAKSSLSTPSTTIPTSNSSVS-LQTSSSLIISSPIISSSLTATSTSTPALTHSITPSN 588

Query: 290 LIGRTLIIERSQT*KDSFLNCACS 361
               + +I  S T   S L   CS
Sbjct: 589 TSYTSSLIPSSSTDYSSSLITVCS 612


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 116 KAKSSATMTARAISENLKHVCCLRTWS 196
           K K+S     R   EN+ H+CC  T S
Sbjct: 45  KDKNSTLKIDRLFEENVPHLCCQVTAS 71


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 309 ISVRPINVQILIE*NHFICVS 247
           I  RPI   + I+  HFIC S
Sbjct: 197 IHARPIQTSVRIDTTHFICSS 217


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = +1

Query: 280  NLDIDRAHANYRAITNLKRQFPQLRV---FLTVGGDDDTEDPQKYNL 411
            ++ +  AH  +    N  RQFP L V   F   G D        YNL
Sbjct: 950  SIALSTAHVQHGDTLNYSRQFPNLFVQGAFNRFGYDGSMPSKMSYNL 996


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,627
Number of Sequences: 5004
Number of extensions: 38021
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)